Computational Biology Assignments
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Updated
Dec 21, 2017 - Python
Computational Biology Assignments
Basic seed-and-extend DNA sequence read aligner
Highly optimized genomic resources for GPUs
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
Splice-aware Tool for Alignment of Pyrosequencing Reads
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Repository for the master course Genomic IT at the School of Electrical Engineering
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
Sequence Indexing and Search
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
Wavelet tree based on a fixed block boosting technique
A string library
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Burrows-Wheeler Transform and FM-index in golang
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