Splice-aware Tool for Alignment of Pyrosequencing Reads
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Updated
Sep 24, 2019 - C
Splice-aware Tool for Alignment of Pyrosequencing Reads
Web App: Generate suffix array, Burrows-Wheeler transform, and FM indices for input strings Translate DNA sequences into their corresponding protein sequences
Repository for the master course Genomic IT at the School of Electrical Engineering
Basic seed-and-extend DNA sequence read aligner
bvSFM (bit-vector sampled FM-index) is a tool for sequence alignment.
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
Highly optimized genomic resources for GPUs
Computational Biology Assignments
Evaluation tools for "A performant bridge between fixed-size and variable-size seeding"
Construction and utility of BWT for DNA string sets
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Wavelet tree based on a fixed block boosting technique
Burrows-Wheeler Transform and FM-index in golang
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
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