fasta
Here are 385 public repositories matching this topic...
Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.
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Oct 16, 2014 - Python
Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.
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Nov 7, 2014 - Python
A small command line Python utility for retrieving FASTA sequences from NCBI databases.
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Nov 25, 2014 - Python
An implementation of the Jukes-Cantor algorithm for Homework Assignment 5 in MCS 5603.
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Dec 9, 2014 - Python
Letter set generator and sequencer read simulator
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Nov 27, 2016 - C++
Manage BED files with Node.JS (Bioinformatics)
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Dec 6, 2016 - JavaScript
NpSearch: Search for Neuropeptides
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Jan 26, 2017 - Ruby
Calculating the metrics for an input fasta file, formatting an assembly fasta file for blast, blast input gene fasta file to assembly blastdb, parse blast output file into .bp file, parse .bp file to identify hits, extract those hits from assembly fasta file and output them in output file .
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Feb 17, 2017 - Python
Generates all possible sequences of amino acids and saves to a FASTA file. You can edit the min and max length to tell the program what length of sequences is desired.
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Feb 19, 2017 - Python
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
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Mar 3, 2017 - Python
basic visualization of hmm profile matches to multiple fasta files
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Apr 3, 2017 - Python
Implementation of the FASTA algorithm from bioinformatics
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Apr 4, 2017 - Haskell
Perl implementation of Markov Chain for the course BIO331
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May 3, 2017 - Perl
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