[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
-
Updated
Jun 10, 2024 - Shell
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
This is an application that shows the informational structure of DNA sequences. The objective digital stain (ODS) is represented by a distribution of points on a two-dimensional image, which reflects the information structure inside a DNA/RNA sequence.
fast and comprehensive k-mer counting package
TrueDNA is a comprehensive and powerful computational biology project focused on DNA prediction and DNA replication. This GitHub repository serves as a central hub for the TrueDNA project, tools, and resources for researchers, computational biologists, and AI enthusiasts working in the field of artificial intelligence and genomics.
Simple JS implementation of Objective Digital Stain (ODS) produces ODS images from DNA sequences. On ODSs, the information content (IC) is represented vertically on the y-axis and the frequency of different letters is represented horizontally on the x-axis.
R package for estimating copy-number variation from targeted DNA sequencing
Repository that has the standard DNA, RNA and Protein Objects and the standard methods to interact with them.
A library for reading and writing DNA test kit files in PHP.
Counts all SNP mutations in .map file
HCAT CLI is a command line interface tool to analyze DNA sequence data.
DNA sequences manipulation and analysis. Released on 2018.
Program do ustalania rozmiarów fragmentów DNA na podstawie tempa migracji na żelu (1992-94)
Small school project to convert from DNA to mRNA to proteins using C++
Various utilities for working with FASTA nucleotide sequences
Sequence Logo - relative style is an alternative that provides full control over how the graphics of a Sequence Logo should look like, and is an alternative to an application called WebLogo. All the inner workings of this open source application are written in native javascript.
Package to parse DNA kit files, and import them into Laravel
Utility to generate codon mutations of a given coding DNA sequence
Add a description, image, and links to the dna-processing topic page so that developers can more easily learn about it.
To associate your repository with the dna-processing topic, visit your repo's landing page and select "manage topics."