Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

Workshop • Analysis of RNA-seq data

Interactive R package to quantify, analyse and visualise alternative splicing

ASAP : Automated Single-cell Analysis Pipeline

Gene-level general linear mixed model

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)

single cell and bulk RNASeq analysis scripts

Scripts to run differential expression analysis using DESeq2 package

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom

RNA-seq alignment and analysis pipeline

Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexamethasone treatment data set and incorporated Machine Learning into project.

📊 An R package of RNA-seq workflow

Comparison of gene usage in immune repertoires under different biological conditions

GSE147507 SARS-Cov-2 Dataset from Mt. Sinai

bioTEA - A user friendly tool to perform transcript expression analysis

Code and figures for the Differential Causal Inference (DCI) algorithm

Pipeline for analyzing RNAseq data of human and mouse - beginner friendly with minimal user inputs

Temporal Integrative Genomics Analysis in R

Laboratory of biological Data Mining 💻

An integrative resource for deubiquitinating enzymes (DUBs) served at https://labsyspharm.github.io/dubportal