The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Jun 8, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
Repository of tutorials for The COBRA Toolbox
High-level, high-performance, constraint-based reconstruction and analysis in Julia
A Python framework for structural systems biology
The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
Constraint-Based Reconstruction and EXascale Analysis
A Python Library for modeling combinatorial constrained problems
Genome-scale model of Yarrowia lipolytica.
Safe Pontryagin Differentiable Programming (Safe PDP) is a new theoretical and algorithmic safe differentiable framework to solve a broad class of safety-critical learning and control tasks.
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
CBMPy is a Python based platform for constraint based modelling and analysis.
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
Rule-Based Cebuano POS Tagger using Constraint-Based Grammar
Memote-created repository for Rhodosporidium toruloides model iRhto
Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam
Genome-scale metabolic model of Methylococcus capsulatus.
Pretty awesome generic sudoku solver that is faster that you will ever be.
Constraint-based metabolic modeling software from the Chandrasekaran Lab
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