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Apr 12, 2021 - Python
constraint-based-modeling
Here are 62 public repositories matching this topic...
Source code for EMILiO: A fast algorithm for genome-scale strain design.
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May 12, 2020 - MATLAB
Integrating the transcriptional regulatory network with genome-scale metabolic models.
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May 23, 2020 - MATLAB
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Jul 31, 2018 - MATLAB
Software developed and main results obtained in the Master dissertation: A model validation pipeline for healthy tissue genome-scale metabolic models. Dissertation link to be added.
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Feb 3, 2022 - Jupyter Notebook
Constraint-based metabolic modelling with sparse IPOPT
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Nov 2, 2021 - Python
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
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Mar 11, 2024 - Jupyter Notebook
Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.
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Mar 28, 2023 - MATLAB
Constraint-solver to solve the problem of Field Missions-UAV-Pilot Scheduling
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Sep 2, 2018 - Python
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
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Jul 27, 2022 - Jupyter Notebook
Memote-created repository for Rhodosporidium toruloides model iRhto
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Mar 1, 2023 - HTML
A coarse-grained biochemical resource allocation model of phototrophic growth.
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Nov 28, 2023 - Python
Pretty awesome generic sudoku solver that is faster that you will ever be.
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Oct 9, 2015 - Python
A metabolic modeling workflow for communities of organisms in an nasal medium.
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May 9, 2022 - Python
Msc thesis project. Evaluation of gap-filling tools for constraint-based, genome-scale models.
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Mar 19, 2019 - Python
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Nov 15, 2021 - Python
Genome-scale metabolic reconstruction of Rhizophagus irregularis
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Mar 7, 2022 - HTML
Genome-scale metabolic model of Rhodotorula toruloides
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Apr 19, 2020 - MATLAB
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