DNA Sequencing 1 Top Coder Data Science Marathon Match
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Updated
May 7, 2016 - C++
DNA Sequencing 1 Top Coder Data Science Marathon Match
BWT, FM-index and bits vector for analyzing DNA sequence data.
Experimental parallel compression algorithm
Computational Biology Assignments
Solutions for information theory homeworks course (ITMO 2016)
I along my project partner was given "Text Compression" as a final lab task. We were asked to combine 3 algorithms, huffman, BWT, MTF, in different orders to check which order does the most compression.
Text Compression is a program that compresses the physical size of text file (txt pdf etc) using Huffman, BWT and MTF. These three algorithms are combined in different sequences to check which combination does the most compression.
Reversible permutation of the characters of a string, which can be used for lossless data compression based on block sorting.
The final project in my undergraduate life, a data compressor based on BWT, MTF and Huffman-coding.
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
Space-efficient variable-order Markov models
Splice-aware Tool for Alignment of Pyrosequencing Reads
A file compression tool that implements BWT, MTF, LZW algorithms
An attempt to compress the enwik8 file
Implementation of the RLE archiving algorithm using the BWT transformation.
Disk-based approach to compute the BWT and the LCP of a set of strings
msufsort parallel suffix array construction algorithm
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