R package for the statistical detection of orthogroups associated to plant traits pointing to specific genes that might be present of absence and are good candidate genes responsible for the plant trait.
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Updated
May 27, 2024 - R
R package for the statistical detection of orthogroups associated to plant traits pointing to specific genes that might be present of absence and are good candidate genes responsible for the plant trait.
Files and code used to generate the CARTAR app to identify and validate CAR targets for cancer treatment.
Files and code used to generate the CARTAR app to identify and validate CAR targets for cancer treatment.
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
A tool for loss of heterozygosity (LOH) detection
An application for DNA sequence analysis written in Scala and deployed using Apache Spark&Hadoop.
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
This project is a comparative study of Autoencoder (AE) and Principal Component Analysis (PCA) for dimensionality reduction in gene expression data. It aims to understand the unique capabilities and applications of both methods in handling high-dimensional biological data.
Incremental building of phylogenetic distance tree
📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
Get fourfold degenerate pi from no-gap alignments
Practical Optical Tweezers Analysis TOol
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
Annotation helper tool for the manual curation of transposable element consensus sequences
A Rust library and CLI tool to handle genomic transcripts
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Contains a sample dataset with rehab sessions of stroke victims and data preparation example
🌊 Analyse experimental conditions and replicates jointly to remove cell-type specific bias in multi-condition ChIP-Seq
BioFlask is an simple web interface for pairwise alignment.
WebApp for DNA variants interpretation
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