PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
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Updated
Jun 27, 2024 - R
PhyloTrace is a GUI platform for a fully controllable cgMLST analysis workflow.
Simple bacterial assembly and annotation pipeline
Bacterial swiss-army-knife pipeline for NGS data
A flexible pipeline for complete analysis of bacterial genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
Bioinformatics tool to find integrons in bacterial genomes
Condense and summarize many results form PADLOC into CSV for heatmaps
string search for the direct detection of the insertion elements and clipping them off
bacterial metagenomes and pangenome graphs from both illumina and long reads
genome annotation analyzer for the microbiome analysis
analyzing bacterial genome based ontologies and phylogenomics informativeness
bacterial genome deep learning using keras
genome assembler for cleaning, mapping and assembling genomes.
interpro domain analyzer
from trinity assembly to deep learning.
R approach to analyze evolutionary phylogenomics
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
Phage-Host Interaction Search Tool
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
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