Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
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Updated
Apr 7, 2023 - R
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
The mitochondrial workbench
Pipeline for generation of fasta unique capture-probes from a set of genomes
Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations
Website for a ~2h demonstration of Poseidon and some of its tools, features and components
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Estimating temporally variable selection intensity from ancient DNA data
R Package - Spatiotemporal Ancestry Interpolation and Search
Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
Coprolite host Identification pipeline
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Raw code to get polymorphisms from samples analysed by using the PowerSeq® CRM Nested System kit (Promega Corporation)
Scripts used by George S. Long
Ancient DNA Read Simulator for Metagenomic
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
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