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Steinegger Lab

Steinegger Lab Github repositories

Pinned

  1. foldseek foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    C 690 92

  2. foldcomp foldcomp Public

    Compressing protein structures effectively with torsion angles

    C++ 144 14

  3. Metabuli Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    C++ 93 9

  4. ufcg ufcg Public

    UFCG: Universal Fungal Core Genes

    Java 28

  5. conterminator conterminator Public

    Detection of incorrectly labeled sequences across kingdoms

    C 72 7

Repositories

Showing 10 of 23 repositories
  • colabfold-protocol Public

    ColabFold protocol

    steineggerlab/colabfold-protocol’s past year of commit activity
    Jupyter Notebook 20 3 0 0 Updated Jun 22, 2024
  • unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    steineggerlab/unicore’s past year of commit activity
    Rust 7 GPL-3.0 0 0 0 Updated Jun 22, 2024
  • SeekRank Public

    Rank homologous protein sequences based on a regressor trained on experimental measures

    steineggerlab/SeekRank’s past year of commit activity
    Jupyter Notebook 5 MIT 0 0 0 Updated Jun 22, 2024
  • Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    steineggerlab/Metabuli’s past year of commit activity
    C++ 93 GPL-3.0 9 7 0 Updated Jun 21, 2024
  • foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    steineggerlab/foldseek’s past year of commit activity
    C 690 GPL-3.0 92 123 0 Updated Jun 16, 2024
  • foldmason Public
    steineggerlab/foldmason’s past year of commit activity
    C 13 GPL-3.0 0 4 0 Updated Jun 14, 2024
  • foldseek-multimer-analysis Public
    steineggerlab/foldseek-multimer-analysis’s past year of commit activity
    Python 1 0 0 0 Updated Jun 13, 2024
  • afdb-clusters-web Public
    steineggerlab/afdb-clusters-web’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 1 0 Updated May 24, 2024
  • foldseek-analysis Public

    Scripts to benchmark and train foldseek

    steineggerlab/foldseek-analysis’s past year of commit activity
    Jupyter Notebook 22 4 3 1 Updated May 22, 2024
  • ufcg Public

    UFCG: Universal Fungal Core Genes

    steineggerlab/ufcg’s past year of commit activity
    Java 28 GPL-3.0 0 14 0 Updated May 7, 2024
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