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__author__ = 'Sofya Lipnitskaya' | ||
__version__ = '2023.07' | ||
__version__ = '2023.07.1' | ||
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from .core import RegulAS | ||
from .persistence import * |
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import regulAS | ||
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from pathlib import Path | ||
from setuptools import setup | ||
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this_directory = Path(__file__).parent | ||
long_description = (this_directory / "README.md").read_text() | ||
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setup( | ||
name='regulAS', | ||
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url='https://github.com/slipnitskaya/regulAS', | ||
author='Sofya Lipnitskaya', | ||
author_email='[email protected]', | ||
description='regulAS is a bioinformatics package designed to assist researchers in identifying prospective ' | ||
'regulators of alternative splicing events using large-scale RNA-Seq datasets from multiple omics ' | ||
'data sources. Its core functionality offers automation of data processing, machine learning ' | ||
'experiments, as well as efficient storage and processing of obtained results. ' | ||
'With basic modules that integrate data retrieval of tumor and healthy samples generated by ' | ||
'TCGA (https://www.cancer.gov/tcga) and GTEx (https://gtexportal.org/home) projects, predictive ' | ||
'modelling and feature ranking capabilities, along with flexible report generation in tabular and ' | ||
'visual forms, regulAS provides a comprehensive suite of tools for streamlined data exploration and ' | ||
'research workflows. Additionally, regulAS supports flexible experiment configuration through YAML ' | ||
'files, allowing users to easily adapt the package to their specific needs. One of the standout ' | ||
'feature of regulAS is its extensibility, enabling end-users to expand its functionality by writing ' | ||
'custom modules in Python. Discover the versatility of regulAS for your computational biology and ' | ||
'bioinformatics research.', | ||
description='Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data', | ||
long_description=long_description, | ||
long_description_content_type='text/markdown', | ||
python_requires='>=3.7', | ||
install_requires=[ | ||
'networkx==2.5', | ||
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