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@siplab-gt

SIPLab

README.md

Welcome! 👋

This is the home of software produced by the Structured Information for Precision Neuroengineering Lab (SIPLab) led by Chris Rozell and Sankar Alagapan at Georgia Tech.

Our research focus is in computational neuroengineering, an intersection of data science, neurotechnology and computational modeling that aims to advance the understanding of brain function and the design of effective interventions.

See CLOCTools for real-time closed-loop optogenetic control software, developed in collaboration with the Garrett Stanley lab.

Pinned

  1. generative-causal-explanations generative-causal-explanations Public

    Code for "Generative causal explanations of black-box classifiers"

    Python 32 12

  2. infotuple infotuple Public

    Code supplement for "Active Ordinal Querying for Tuplewise Similarity Learning", appearing in AAAI 2020

    Python 5 1

  3. pairsearch pairsearch Public

    Project code for "Active Embedding Search via Noisy Paired Comparisons" (ICML 2019)

    Python 8 3

  4. manifold-autoencoder-extended manifold-autoencoder-extended Public

    Jupyter Notebook 3 2

  5. cleo cleo Public

    Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

    Jupyter Notebook 10

Repositories

Showing 10 of 25 repositories
  • cleo Public

    Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

    Jupyter Notebook 10 MIT 0 8 (1 issue needs help) 1 Updated May 31, 2024
  • wslfp Public

    Lightweight package for computing the Weighted Sum of synaptic currents LFP proxy from Mazzoni, Lindén et al., 2015

    Python 0 MIT 0 1 1 Updated Apr 4, 2024
  • probabilistic-decomposed-linear-dynamical-systems Public

    Probabilistic Decomposed Linear Dynamical Systems

    Python 1 MIT 0 0 0 Updated Mar 1, 2024
  • tklfp Public

    Lightweight package for computing the kernel LFP approximation from Teleńczuk et al., 2020

    Python 1 Apache-2.0 0 0 0 Updated Dec 20, 2023
  • uot-irst Public

    Implementation of unbalanced optimal transport algorithms for infrared search and track from Bertrand et al., 2020

    MATLAB 0 0 0 0 Updated Oct 31, 2023
  • emd-df Public

    MATLAB implementation of the Earth Mover's Distance Dynamic Filtering (EMD-DF) algorithm from Bertrand et al., 2018

    MATLAB 0 0 0 0 Updated Oct 31, 2023
  • Decomposed-Linear-Dynamical-Systems Public

    This is code for the paper "Decomposed Linear Dynamical Systems (dLDS) for learning the latent components of neural dynamics" (Mudrik, 2022)

    0 0 0 0 Updated Oct 30, 2023
  • .github Public
    0 0 0 0 Updated Sep 20, 2023
  • Sparse-Coding-Dictionary-Learning-Library Public

    Code to implement the sparse coding dictionary learning algorithm described in "Emergence of simple-cell receptive field properties by learning a sparse code for natural images" in Nature (1996) by Olshausen and Field.

    MATLAB 0 0 0 0 Updated Oct 24, 2022
  • Convergence-speed-of-a-dynamical-system-performing-sparse-coding Public

    Code to produce the results in the paper "Convergence Speed of a Dynamical System for Sparse Recovery" in IEEE Trans. Signal Processing (2013) by Balavoine, Rozell and Romberg. Code by A. Balavoine.

    MATLAB 0 0 0 0 Updated Oct 24, 2022
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