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  1. CSI-Microbes-identification CSI-Microbes-identification Public

    Code for the identification step for CSI-Microbes

    Python 14 5

  2. CSI-Microbes-analysis CSI-Microbes-analysis Public

    The code for running the analysis component of CSI-Microbe

    Python 5 2

  3. madhitter madhitter Public

    Python 9

  4. drug.OnTarget drug.OnTarget Public

    Identifying drug targets by integrating large-scale drug and genetic screens.

    HTML 2

  5. tcga-microbiome-prediction tcga-microbiome-prediction Public

    Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2…

    Python 13 9

  6. scSigR scSigR Public

    Generate signature matrix from single cell data.

    R 8 7

Repositories

Showing 10 of 31 repositories
  • MORSE Public
    ruppinlab/MORSE’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 25, 2024
  • ProcessTrialtrove Public

    Software for analyzing the data in the trialtrove database

    ruppinlab/ProcessTrialtrove’s past year of commit activity
    Python 0 1 0 0 Updated Feb 26, 2024
  • CSI-Microbes-identification Public

    Code for the identification step for CSI-Microbes

    ruppinlab/CSI-Microbes-identification’s past year of commit activity
    Python 14 5 1 0 Updated Jan 31, 2024
  • CSI-Microbes-analysis Public

    The code for running the analysis component of CSI-Microbe

    ruppinlab/CSI-Microbes-analysis’s past year of commit activity
    Python 5 2 0 0 Updated Jan 3, 2024
  • SAHMI Public Forked from sjdlabgroup/SAHMI

    SAHMI fork for CSI-Microbes comparison

    ruppinlab/SAHMI’s past year of commit activity
    R 0 10 0 0 Updated Dec 27, 2023
  • DECODEM Public

    Investigate the predictive power of the TME for patient response in a cell-type-specific manner

    ruppinlab/DECODEM’s past year of commit activity
    Python 0 0 0 0 Updated Dec 1, 2023
  • RNA-snakemake-rules Public

    Snakemake rules written for RNA-seq

    ruppinlab/RNA-snakemake-rules’s past year of commit activity
    Python 0 0 0 0 Updated Nov 27, 2023
  • PERCEPTION Public

    Utilizing single-cell omics from patients tumor to predict response and resistance.

    ruppinlab/PERCEPTION’s past year of commit activity
    37 13 1 1 Updated Apr 25, 2023
  • drug.OnTarget Public

    Identifying drug targets by integrating large-scale drug and genetic screens.

    ruppinlab/drug.OnTarget’s past year of commit activity
    HTML 0 2 1 0 Updated Mar 3, 2023
  • ruppinlab/Tcell_Ucp2’s past year of commit activity
    R 0 0 0 0 Updated Feb 11, 2023

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