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supplementary_tables

supplementary_tables

 
 

README.md

README.md

 
 

finalized gut analysis (part 1).ipynb

finalized gut analysis (part 1).ipynb

 
 

finalized gut analysis (part 2).ipynb

finalized gut analysis (part 2).ipynb

 
 

finalized gut analysis (part 3).ipynb

finalized gut analysis (part 3).ipynb

 
 

finalized lcmv analysis (part 1).ipynb

finalized lcmv analysis (part 1).ipynb

 
 

finalized lcmv analysis (part 2: wt med ln).ipynb

finalized lcmv analysis (part 2: wt med ln).ipynb

 
 

finalized lcmv analysis (part 3: wt tissues).ipynb

finalized lcmv analysis (part 3: wt tissues).ipynb

 
 

helper_functions.py

helper_functions.py

 
 

qvalue_script.R

qvalue_script.R

 
 

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Analysis for the scRNA-seq component of the uLIPSTIC project

Full details in our preprint:

Universal recording of cell-cell contacts in vivo for interaction-based transcriptomics

Sandra Nakandakari-Higa, Maria Cecilia Campos Canesso, Sarah Walker, Aleksey Chudnovskiy, Johanne T Jacobsen, S. Martina Parigi, Karol Fiedorczuk, Elaine Fuchs, Angelina M Bilate, Giulia Pasqual, Daniel Mucida, Yuri Pritykin, Gabriel D Victora

bioRxiv 2023.03.16.533003; doi: https://doi.org/10.1101/2023.03.16.533003

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