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fixing typos
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pmitev committed May 3, 2021
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2 changes: 1 addition & 1 deletion docs/goods_bads.md
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Expand Up @@ -24,7 +24,7 @@ Here is an example scenario
...
# Clen the installation folder (unless you want to keep it)
# Clean the installation folder (unless you want to keep it)
rm -rf /installs
```

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7 changes: 4 additions & 3 deletions docs/remote_repositories.md
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Expand Up @@ -116,7 +116,7 @@ Type "help", "copyright", "credits" or "license" for more information.

### metaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

Here is an example how to use the metaWRAP pipeline with via the docker container - [installation instructions](https://github.com/bxlab/metaWRAP#docker-installation).
Here is an example how to use the metaWRAP pipeline from the docker container - [installation instructions](https://github.com/bxlab/metaWRAP#docker-installation).

```
$ docker pull quay.io/biocontainers/metawrap:1.2--1
Expand All @@ -131,8 +131,9 @@ INFO: Starting build...
Getting image source signatures
...
```
This will bring the docker container locally and covert it to Singularity format.

One can start the container and use it interactively.
Then, one can start the container and use it interactively.

```
$ ./metawrap_1.2--1.sif
Expand All @@ -142,7 +143,7 @@ Singularity> metawrap --version
metaWRAP v=1.2
```

but to run the tool from the command line (as you would use it in scripts) we need to add the call for the tool from Singularity.
To run the tool from the command line (as you would use it in scripts) we need to add the call for the tool from Singularity.

Original commad in the cript:
$ **metawrap** binning -o Lanna-straw_initial_binning_concoct -t 20 -a /proj/test/megahit_ass_Lanna-straw/final.contigs.fa --concoct --run-checkm /proj/test/Lanna-straw_reads_trimmed/*.fastq
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