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Bump hictk and use Arrow to construct DFs of pixels #271

Bump hictk and use Arrow to construct DFs of pixels

Bump hictk and use Arrow to construct DFs of pixels #271

Workflow file for this run

# Copyright (C) 2023 Roberto Rossini ([email protected])
# SPDX-License-Identifier: MIT
name: CI
on:
workflow_dispatch:
push:
branches: [ main ]
paths:
- ".github/workflows/pip.yml"
- "cmake/**"
- "src/**"
- "test/**"
- "CMakeLists.txt"
- "conanfile.txt"
- "pyproject.toml"
- "setup.cfg"
- "setup.py"
tags:
- 'v*.*.*'
pull_request:
paths:
- ".github/workflows/pip.yml"
- "cmake/**"
- "src/**"
- "test/**"
- "CMakeLists.txt"
- "conanfile.txt"
- "pyproject.toml"
- "setup.cfg"
- "setup.py"
env:
CONAN_HOME: "${{ github.workspace }}/conan/"
# https://stackoverflow.com/a/72408109
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
defaults:
run:
shell: bash
jobs:
build-project:
strategy:
fail-fast: false
matrix:
platform: [windows-latest, macos-latest, ubuntu-latest]
python-version: ["3.9", "3.12"]
runs-on: ${{ matrix.platform }}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Add requirements
run: python -m pip install --upgrade wheel setuptools
- name: Generate cache key
id: cache-key
run: |
hash="${{ hashFiles('conanfile.txt', '.github/workflows/pip.yml') }}"
echo "conan-key=pip-$hash" >> $GITHUB_OUTPUT
- name: Restore Conan cache
id: cache-conan
uses: actions/cache/restore@v4
with:
key: conan-${{ steps.cache-key.outputs.conan-key }}
path: ${{ env.CONAN_HOME }}
- name: Build and install
run: pip install --verbose '.[test]'
- name: Save Conan cache
uses: actions/cache/save@v4
if: steps.cache-conan.outputs.cache-hit != 'true'
with:
key: conan-${{ steps.cache-key.outputs.conan-key }}
path: ${{ env.CONAN_HOME }}
- name: Test
run: python -m pytest test -v
pip-status-check:
name: Status Check (CI)
if: ${{ always() }}
runs-on: ubuntu-latest
needs:
- build-project
steps:
- name: Collect job results
if: needs.build-project.result != 'success'
run: exit 1