BIOCAD

Currently, this repository is not intended to represent work, but rather to store and transmit data.

This project took part in the Sakharov Readings 2021. Watch the speech: https://youtu.be/Drrn39cinNs (RU)

Presentation documents (RU) are located in the docs folder

View current test results

Probably useful

• Web-site with cut off genomes
• BLAST partly algo explanation
• DUST algo
• E-value pt.1 & E-value pt.2

Samples

1. large01/large_genome1.fasta: Rickettsia rickettsii str. Brazil, complete genome
   large01/large_genome2.fasta: Rickettsia rickettsii str. Iowa, complete genome

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2. large02/large_genome1.fasta: Brucella abortus 104M chromosome 1, complete sequence
   large02/large_genome2.fasta: Brucella suis bv. 2 strain Bs143CITA chromosome I, complete sequence

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3. large03/large_genome1.fasta: Brucella abortus 104M chromosome 2, complete sequence
   large03/large_genome2.fasta: Brucella suis bv. 2 strain Bs143CITA chromosome II, complete sequence

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4. large04/large_genome1.fasta: Brucella pinnipedialis B2/94 chromosome 2, complete sequence
   large04/large_genome2.fasta: Brucella melitensis biovar Abortus 2308 chromosome II, complete sequence, strain 2308

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5. large05/large_genome1.fasta: Rickettsia rickettsii str. Iowa, complete sequence
   large05/large_genome2.fasta: Rickettsia prowazekii str. Madrid E, complete genome

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6. large06/large_genome1.fasta: Methanococcus maripaludis C5, complete genome
   large06/large_genome2.fasta: Methanococcus maripaludis X1, complete genome

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7. large07/large_genome1.fasta: Mycobacterium tuberculosis variant africanum GM041182, complete genome
   large07/large_genome2.fasta: Mycobacterium intracellulare ATCC 13950, complete sequence

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8. large08/large_genome1.fasta: Desulfurococcus kamchatkensis 1221n, complete genome
   large08/large_genome2.fasta: Desulfurococcus fermentans DSM 16532, complete genome

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9. large09/large_genome1.fasta: Sulfolobus islandicus M.16.27, complete genome
   large09/large_genome2.fasta: Sulfolobus islandicus REY15A, complete genome

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10. large10/large_genome1.fasta: Rickettsia canadensis str. CA410, complete genome
    large10/large_genome2.fasta: Rickettsia conorii str. Malish 7, complete sequence

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11. large11/large_genome1.fasta: Rickettsia canadensis str. CA410, complete genome
    large11/large_genome2.fasta: Rickettsia sibirica 246 chromosome, whole genome shotgun sequence

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12. large12/large_genome1.fasta: Rickettsia argasii T170-B grat170.contig.0_1, whole genome shotgun sequence large12/large_genome2.fasta: Rickettsia endosymbiont of Ixodes pacificus strain Humboldt reip.contig.0_1, whole genome shotgun sequence