Merge pull request #20 from moka-guys/hotfix/fix_parser

Fix parser to split comma separated args (#20)

README.md

@@ -74,7 +74,7 @@ options:
  -T TSO_PANELS, --tso_panels TSO_PANELS
  Comma separated string of tso panels
  -D DEV_PANNOS, --dev_pannos DEV_PANNOS
- Development pan numbers
+ Comma separated development pan numbers
  -L LOGDIR, --logdir LOGDIR
  Directory to save the output logfile to
  -NSH NO_STREAM_HANDLER, --no_stream_handler NO_STRAM_HANDLER

samplesheet_validator/__main__.py

@@ -30,28 +30,28 @@ def get_arguments():
  parser.add_argument(
  "-SI",
  "--sequencer_ids",
- type=str,
+ type=lambda s: [i for i in s.split(',')],
  required=True,
  help="Comma separated string of allowed sequencer IDS",
  )
  parser.add_argument(
  "-P",
  "--panels",
- type=str,
+ type=lambda s: [i for i in s.split(',')],
  required=True,
  help="Comma separated string of allowed panel numbers",
  )
  parser.add_argument(
  "-T",
  "--tso_panels",
- type=str,
+ type=lambda s: [i for i in s.split(',')],
  required=True,
  help="Comma separated string of tso panels",
  )
  parser.add_argument(
  "-D",
  "--dev_pannos",
- type=str,
+ type=lambda s: [i for i in s.split(',')],
  required=True,
  help="Comma separated string of development pan numbers",
  )