Genomic-Analytics-Platform

GenomicAnalyticsPlatform: A robust tool for omics data retrieval, analysis, and visualization, designed to empower scientific research in genomics. Features an intuitive UI and advanced analytical capabilities for gene expression data. Ideal for researchers and scientists seeking deep genomic insights.

• ⚡ API : Contains documentation for the API module, which provides endpoints for data retrieval and analysis.

  • FASTAPI endpoint:
    • Local: http://localhost:8080/api
    • Live: http://144.24.160.60:8080/api 👈

• 🚀 Dashboard: Provides information about the dashboard module, which offers an intuitive user interface for visualizing and exploring genomic data.

  • Dashboard url:
    • Local: http://localhost:3000
    • Live: http://144.24.160.60:3000 👈

• MongoDB Data Insert: Includes instructions on how to insert data into MongoDB for further analysis.

• Anomaly Detector Trainer: Describes the anomaly detector trainer module, which helps in training models to detect anomalies in genomic data.

API	Dashboard
	Light Mode
	Dark Mode

Mobile-Dashboard	Mobile-Dashboard

How To Use It

Install docker desktop or orbstack

make setup

open http://localhost:3000

Commands

Start All Services and Seed Database

Start All Services and Seed Database

To start all services and seed the database, run:

make setup

Start Services

To start all the services, use:

make services-up

Stop Services

To stop all running services, use:

make services-down

Seed Database

To seed the database, run:

make run-data-seeder

Build

For building the application, run:

make build

Fresh Start

For a fresh start (rebuild and restart everything), use:

make fresh-start

Delete everything related with docker ( also your other projets will be deleted)

docker system prune -a --volumes

Author

Murat Mayadağ