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The Marcotte Lab

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  1. protein_complex_maps protein_complex_maps Public

    Kdrew's scripts for handling protein complex map data

    HTML 12 7

  2. protein_complex_maps_public protein_complex_maps_public Public

    Public repository for building and analyzing protein complex maps

    Python 10 3

  3. Gene-Ages Gene-Ages Public

    Consensus ages for genes

    Jupyter Notebook 8 3

  4. MSblender MSblender Public

    MSblender is a statistical tool for merging database search results from multiple database search engines for peptide identification based on a multivariate modeling approach.

    Shell 6 6

  5. SLICEM SLICEM Public

    Python 5 1

  6. plum plum Public

    Generalizable phylogenetic latent variable models for ancestral network reconstruction

    Python 4

Repositories

Showing 10 of 58 repositories
  • pept-prot-infer Public Forked from SophiaBailingZhou/pept-prot-infer

    Tool for doing peptide and protein inference and quantitation on single molecule sequencing datasets, particularly on fluorosequencing data preprocessed by https://github.com/marcottelab/whatprot

    marcottelab/pept-prot-infer’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Apr 22, 2024
  • leca-proteomics Public

    Scripts & figures for the conserved eukaryotic interactome project

    marcottelab/leca-proteomics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 8, 2024
  • whatprot Public
    marcottelab/whatprot’s past year of commit activity
    C++ 2 MIT 2 0 0 Updated Feb 23, 2024
  • iTF-seq Public

    iTF-seq: Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches

    marcottelab/iTF-seq’s past year of commit activity
    Python 0 0 0 0 Updated Feb 12, 2024
  • protein_complex_maps Public

    Kdrew's scripts for handling protein complex map data

    marcottelab/protein_complex_maps’s past year of commit activity
    HTML 12 MIT 7 1 2 Updated Dec 13, 2023
  • MSblender Public

    MSblender is a statistical tool for merging database search results from multiple database search engines for peptide identification based on a multivariate modeling approach.

    marcottelab/MSblender’s past year of commit activity
    Shell 6 MIT 6 1 0 Updated Jul 31, 2023
  • cfmsflow Public
    marcottelab/cfmsflow’s past year of commit activity
    Nextflow 3 1 0 2 Updated Jul 6, 2023
  • super.complex Public

    Super.Complex is a supervised machine learning algorithm for community detection in networks. It learns information from known communities and uses this information to find new communities on the network.

    marcottelab/super.complex’s past year of commit activity
    Python 3 MIT 3 1 2 Updated Jul 6, 2023
  • robust-fluorosequencing-plaster Public

    Computational workflow described in robust-fluorosequencing publication

    marcottelab/robust-fluorosequencing-plaster’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 30, 2023
  • thesis_local_ml Public

    David Yang's undergraduate thesis work

    marcottelab/thesis_local_ml’s past year of commit activity
    0 0 0 0 Updated May 1, 2023
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