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marcabeer/README.md

Marc A. Beer

Genomics | Bioinformatics | Spatial analysis | Conservation

About me

I am an interdisciplinary computational biologist interested in 1) applying and developing bioinformatic and spatial analysis tools for understanding population genomic variation and 2) testing the statistical performance of modern spatial population genomics methods using simulation. Thus far, most of my work falls under the subfields of population genomics referred to as landscape genetics and landscape genomics. Accordingly, I am experienced in various aspects of both spatial analysis and genomics analysis, such as the resolution of spatial patterns of gene flow and signatures of spatially divergent selection.

For my Ph.D., I am using next-generation sequencing data to study 1) how abiotic and biotic environmental variation impacts spatiotemporal patterns of genomic variation in the Tasmanian spotted-tailed quoll, a species impacted by the disease-driven decline of the Tasmanian devil and 2) the relative roles of gene flow, genetic drift, and natural selection in the context of the cane toad invasion of Australia. Third, I am using spatially explicit population genomic simulation to evaluate the performance of landscape genetics/genomics analyses. More information about these projects can be found on my website.

Active interests

  • Population genomics
  • Spatial simulation
  • Deep learning
  • Genetic algorithms
  • App development

Tutorials & Workshops

GitHub Stats

Marc's GitHub stats

Popular repositories

  1. stquoll_landscape_genomics stquoll_landscape_genomics Public

    Landscape genetics and genomics analyses for a Tasmanian spotted-tailed quoll RADseq dataset

    R 1

  2. marcabeer.github.io marcabeer.github.io Public

    HTML

  3. marcabeer marcabeer Public

  4. Species_presence_simulation Species_presence_simulation Public

    Simulation of species presence and presence-absence data for ecological niche modeling (ENM), also known as species distribution modeling (SDM).

  5. Simulate_regression_data Simulate_regression_data Public

    Tutorials for simulating regression data of varying flavors.

  6. gramEvol gramEvol Public

    Forked from fnoorian/gramEvol

    Grammatical Evolution for R

    R