Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
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- Stanford University
- https://kundajelab.stanford.edu
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
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- variant-scorer Public
A framework to score and analyze variant effects genome-wide using ChromBPNet models
kundajelab/variant-scorer’s past year of commit activity - anvil-variant-scoring Public
kundajelab/anvil-variant-scoring’s past year of commit activity - bpnet-refactor Public
kundajelab/bpnet-refactor’s past year of commit activity - chrombpnet Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
kundajelab/chrombpnet’s past year of commit activity - scATAC-reprog Public
Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency" by Nair, Ameen et al.
kundajelab/scATAC-reprog’s past year of commit activity