Add material science domain (#597)

* Add material science domain

This based on the work done [here](https://github.com/jvalue/SWC2-JValue-OCDE-Case1/tree/a0cce5e253d1674d31cf22c1484970fb0bd2eea3/models/14946186/shared)

libs/language-server/src/stdlib/domain/material-science/DoiStandardizer.jv

@@ -0,0 +1,98 @@
+// SPDX-FileCopyrightText: 2024 Friedrich-Alexander-Universitat Erlangen-Nurnberg
+//
+// SPDX-License-Identifier: AGPL-3.0-only
+
+/** Transformer to standardize DOI references and remove dx.doi.org/ */
+publish transform RemoveDxDotDoiDotOrg {
+ from valueWithDxDotDoiDotOrg oftype text;
+ to valueWithoutDxDotDoiDotOrg oftype text;
+
+ valueWithoutDxDotDoiDotOrg: valueWithDxDotDoiDotOrg replace /\b(dx\.doi\.org\/)\b/ with "";
+}
+
+/** Transformer to standardize DOI references and remove http://dx.doi.org/ */
+publish transform RemoveHttpDxDotDoiDotOrg {
+ from valueWithHttpDxDotDoiDotOrg oftype text;
+ to valueWithoutHttpDxDotDoiDotOrg oftype text;
+
+ valueWithoutHttpDxDotDoiDotOrg: valueWithHttpDxDotDoiDotOrg replace /^http:\/\/dx\.doi\.org\/\b/ with "";
+}
+
+/** Transformer to standardize DOI references and remove http:// */
+publish transform RemoveHttp {
+ from valueWithHttp oftype text;
+ to valueWithoutHttp oftype text;
+
+ valueWithoutHttp: valueWithHttp replace /(\bhttp:\/\/)/ with "";
+}
+
+/** Transformer to standardize DOI references and remove https://doi.org/ */
+publish transform RemoveHttpsDoiDotOrg {
+ from valueWithHttpsDoiDotOrg oftype text;
+ to valueWithoutHttpsDotDoiDotOrg oftype text;
+
+ valueWithoutHttpsDotDoiDotOrg: valueWithHttpsDoiDotOrg replace /^https:\/\/doi\.org\/\b/ with "";
+}
+
+/**
+* A DOIStandardizer removes common prefixes to [doi references](https://www.doi.org/the-identifier/what-is-a-doi/).
+*
+* properties:
+* doiColumn: The name of the column with the doi references. This column will be overwritten!
+*
+* This block standardizes doi values by removing the following prefixes.
+* 1. dx.doi.org/
+* 2. http://dx.doi.org/
+* 3. http://
+* 4. https://doi.org/
+*
+* Examples:
+* - "https://doi.org/10.1111/example.1234" becomes "10.1111/example.1234"
+* - "dx.doi.org/10.0000/456" becomes "10.0000/456"
+* - "http://10.1015/23" becomes "10.1015/23"
+*/
+publish composite blocktype DOIStandardizer {
+ input UnstandardizedDOI oftype Table;
+ output StandardizedDOI oftype Table;
+
+ property doiColumn oftype text;
+
+ UnstandardizedDOI
+ -> DOIStandardizerDxDotDoiDotOrg
+ -> DOIStandardizerHttpDxDotDoiDotOrg
+ -> DOIStandardizerHttp
+ -> DOIStandardizerHttpsDoiDotOrg
+ -> StandardizedDOI;
+
+ block DOIStandardizerDxDotDoiDotOrg oftype TableTransformer {
+ inputColumns: [
+ doiColumn
+ ];
+ outputColumn: doiColumn;
+ uses: RemoveDxDotDoiDotOrg;
+ }
+
+ block DOIStandardizerHttpDxDotDoiDotOrg oftype TableTransformer {
+ inputColumns: [
+ doiColumn
+ ];
+ outputColumn: doiColumn;
+ uses: RemoveHttpDxDotDoiDotOrg;
+ }
+
+ block DOIStandardizerHttp oftype TableTransformer {
+ inputColumns: [
+ doiColumn
+ ];
+ outputColumn: doiColumn;
+ uses: RemoveHttp;
+ }
+
+ block DOIStandardizerHttpsDoiDotOrg oftype TableTransformer {
+ inputColumns: [
+ doiColumn
+ ];
+ outputColumn: doiColumn;
+ uses: RemoveHttpsDoiDotOrg;
+ }
+}

libs/language-server/src/stdlib/domain/material-science/MaterialScienceValueTypes.jv

@@ -0,0 +1,55 @@
+// SPDX-FileCopyrightText: 2024 Friedrich-Alexander-Universitat Erlangen-Nurnberg
+//
+// SPDX-License-Identifier: AGPL-3.0-only
+
+constraint DOIFormat on text: value matches /\b10\.\d{4}\/[^\s]+\b/;
+/**
+* DOI Format has been constrained by a standard pattern, eg: 10.1007/xxxx
+* The `DOIStandardizer` block can remove common prefixes to this pattern, with the result matching this format.
+*/
+publish valuetype DOI oftype text {
+ constraints: [
+ DOIFormat
+ ];
+}
+
+constraint DateFormatYYYYMMDDRegex on text: value matches /\d{4}-\d{2}-\d{2}/;
+/** DateFormat as YYYY-MM-DD */
+publish valuetype DateYYYYMMDD oftype text {
+ constraints: [
+ DateFormatYYYYMMDDRegex
+ ];
+}
+
+constraint SiUnitConstraint on text: value matches /\b((Second|Metre|Kilogram|Ampere|Kelvin|Mole|Candela)+\^\(\d+(\.\d+)?\|\-\d+(\.\d+)?\)+\s)*\b/;
+/** Constraining the Unit column to be of a specific format like "Second^(1.0)", "Ampere^(1.0)" or "Candela^(1.0)". */
+publish valuetype SiUnit oftype text {
+ constraints: [
+ SiUnitConstraint
+ ];
+}
+
+constraint PressureUnitPascalConstraint on text: value matches /\b(Pascal\^\(\d+(\.\d+)?\|\-\d+(\.\d+)?\)+\s)*\b/;
+/** Constrains Pressure units to be Pascal^(x). */
+publish valuetype PressureUnitPascal oftype text {
+ constraints: [
+ PressureUnitPascalConstraint
+ ];
+}
+
+constraint LengthUnitMeterConstraint on text: value matches /\b(Meter\^\(\d+(\.\d+)?\|\-\d+(\.\d+)?\)+\s)*\b/;
+/** Constrains Length units to be Meter^(x). */
+publish valuetype LengthUnitMeter oftype text {
+ constraints: [
+ LengthUnitMeterConstraint
+ ];
+}
+
+
+constraint TemperatureUnitKelvinConstraint on text: value matches /\b(Kelvin\^\(\d+(\.\d+)?\|\-\d+(\.\d+)?\)+\s)*\b/;
+/** Constrains Temperature units to be Kelvin^(x). */
+publish valuetype TemperatureUnitKelvin oftype text {
+ constraints: [
+ TemperatureUnitKelvinConstraint
+ ];
+}