use both default and job provided options

hubmapconsortium · Nov 30, 2023 · 0d52f95 · 0d52f95
1 parent 1e4ed89
commit 0d52f95
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/steps/run-one.cwl b/steps/run-one.cwl
@@ -82,7 +82,7 @@ steps:
  matrix: gene_expression/matrix_with_gene_expr
  options:
  source: algorithm
- valueFrom: $(self.summarize || getDefaultSummarizeOptions(self))
+ valueFrom: $(self.summarize && getDefaultSummarizeOptions(self))
  out: [summary, annotations]
 
  collect:
@@ -94,4 +94,4 @@ steps:
  outputDirectory:
  source: algorithm
  valueFrom: $(selectOutputDirectory(self))
- out: [directory]
+ out: [directory]