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@gear-genomics

GEAR

Genome Analysis Server

Pinned

  1. tracy tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 94 19

  2. dicey dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 41 3

  3. indigo indigo Public

    Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

    JavaScript 30 6

  4. wily-dna-editor wily-dna-editor Public

    The Wily-DNA-Editor is a browser tool for plasmid assembly, reverse complements DNA, translates to protein code and calculates restriction digests maps.

    JavaScript 11 1

  5. silica silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 9

  6. sabre sabre Public

    Sequence Alignment Browser

    JavaScript 7 1

Repositories

Showing 10 of 24 repositories
  • ancient Public

    Ancestry inference with convolutional neural networks

    Vue 9 GPL-3.0 2 0 2 Updated May 6, 2024
  • apps-page Public

    GEAR home page

    Vue 2 0 0 0 Updated Apr 11, 2024
  • tracy Public

    Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

    C++ 94 BSD-3-Clause 19 8 1 Updated Mar 31, 2024
  • saint Public

    [WIP] saint (similarity hunter): Rapid DNA similarity search against entire genomes.

    JavaScript 4 1 0 0 Updated Mar 21, 2024
  • halo Public

    haplotype processor

    C++ 3 GPL-3.0 1 0 0 Updated Mar 21, 2024
  • padlock Public

    Design padlock probes for in-situ sequencing

    HTML 0 GPL-3.0 0 0 0 Updated Feb 28, 2024
  • sabre Public

    Sequence Alignment Browser

    JavaScript 7 1 0 0 Updated Jan 30, 2024
  • dicey Public

    In-silico PCR, primer design and padlock design for in-situ sequencing

    C++ 41 GPL-3.0 3 3 0 Updated Dec 13, 2023
  • teal Public

    Sanger Trace Viewer

    JavaScript 7 GPL-3.0 2 1 0 Updated Nov 14, 2023
  • silica Public

    In-silico PCR amplification on complete genomes

    JavaScript 9 GPL-3.0 0 0 0 Updated Nov 14, 2023

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