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Update tutorial.md #4937

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Update tutorial.md #4937

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@subinamehta subinamehta commented May 13, 2024

Small aesthetic updates to the tutorial

Small aesthetic updates to the tutorial
@subinamehta subinamehta requested a review from a team as a code owner May 13, 2024 16:15
@@ -106,7 +106,7 @@ The first workflow for the clinical metaproteomics data analysis is the Database
>
> 1. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="topics/proteomics/tutorials/clinical-mp-database-generation/workflows/main_workflow.ga" title="Pretreatments" %}
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf1databasegenerationworkflow]" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf1databasegenerationworkflow]) could not be found.

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Hi @subinamehta! Thanks for you updates. These comments from the bot are because you need to download the workflow files from Galaxy and add them to the GTN, in the workflows folder of your tutorial folder. And then just add the file path and name here.

(let me know if you need some help with that)

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow](https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow)" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow](https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow)) could not be found.

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow](https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow))" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow](https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow))) could not be found.

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow](https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow)" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow](https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow)) could not be found.

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow](https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow)" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow](https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow)) could not be found.

@@ -106,7 +106,7 @@ The first workflow for the clinical metaproteomics data analysis is the Database
>
> 1. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="topics/proteomics/tutorials/clinical-mp-database-generation/workflows/main_workflow.ga" title="Pretreatments" %}
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf1databasegenerationworkflow`" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file (https://usegalaxy.eu/u/galaxyp/w/wf1databasegenerationworkflow) could not be found.

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="[https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow](https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow)" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file ([https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow](https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow)) could not be found.

> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow`" title="Pretreatments" %}
>
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reported by reviewdog 🐶
A None was opened, but closed with hands_on on line 106

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow`" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file (https://usegalaxy.eu/u/galaxyp/w/wf2discovery-workflow) could not be found.

>
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow`" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file (https://usegalaxy.eu/u/galaxyp/w/wf3verificationworkflow) could not be found.

>
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow`" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file (https://usegalaxy.eu/u/galaxyp/w/wf4quantitationworkflow) could not be found.

>
> 7. **Import the workflow** into Galaxy:
>
> {% snippet faqs/galaxy/workflows_run_trs.md path="`https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow`" title="Pretreatments" %}
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🚫 [rdjsonl] <GTN:036> reported by reviewdog 🐶
The linked file (https://usegalaxy.eu/u/galaxyp/w/wf5datainterpretationworklow) could not be found.

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