Set of steps for heritability analysis

Keep the given structure of the raw data for
safety of scripts usage. 

Requires:

#Docker (for ubuntu, sudo apt-get install docker)

######################
#Pre-processing tasks#
######################

#Preprocessing branch

1. Remove extra stats table in each sheet from Demographics.xlsx

For preprocessing, run:

$docker push fesantos/herit
$docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript datastruct.R


############
#Processing#
############

#Master branch

Test if docker image fesantos/herit is available
$docker images | grep "fesantos/herit"

If not, download image
$docker push fesantos/herit

##Univariate analysis##

#Make sure the doc final_table is available at the current directory (uncompressed) and RUN:
#Verify if you are at the same dir
docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript processing.R


##Multivariate analysis##
#Fin data

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript groupfin_null.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript wbfin_null.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_bygroup_fin.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript multiprocessing_fin.R

#Gordon data

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript groupgordon_null.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript wbgordon_null.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit	Rscript multiprocessing_bygroup_gordon.R

docker run -u $(id -u):$(id -g) --rm -ti -v `pwd`:`pwd` -w `pwd` fesantos/herit Rscript	multiprocessing_gordon.R