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VCF-Simplify
VCF-Simplify PublicA python parser to simplify and build the VCF (Variant Call Format).
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phase-extender
phase-extender PublicA python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
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phase-stitcher
phase-stitcher Publica python program to stitch the ReadBack phased haplotypes in F1 hybrids.
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SmallTools
SmallTools PublicCollection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
Python 2
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TestSwitchErrors
TestSwitchErrors PublicThis is a tutorial that shows how phaseExtender can be used for recursive improvement of haplotype phasing and how to test the phasing quality by measuring switcherrors.
Jupyter Notebook 2
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