update version [skip ci]

.github/workflows/airtable_to_json.yml

@@ -19,6 +19,7 @@ jobs:
 
  - name: Install dependencies
  run:
+ pip install pyairtable
  pip install airtable-python-wrapper
  pip install boto3
 

ersilia/_static_version.py

@@ -1 +1 @@
-version = "0.1.33"
+version = "0.1.34"

ersilia/db/hubdata/interfaces.py

@@ -1,7 +1,8 @@
 import requests
-from pyairtable import Table
+import importlib
 from ... import ErsiliaBase
 from ...default import AIRTABLE_MODEL_HUB_BASE_ID, AIRTABLE_MODEL_HUB_TABLE_NAME
+from ...setup.requirements.pyairtable import PyAirtableRequirement
 
 AIRTABLE_MAX_ROWS = 100000
 AIRTABLE_PAGE_SIZE = 100
@@ -16,7 +17,15 @@ def __init__(self, config_json):
  self.max_rows = AIRTABLE_MAX_ROWS
  self.page_size = AIRTABLE_PAGE_SIZE
  self.write_api_key = None
- self.table = Table(self.api_key, self.base_id, self.table_name)
+ self.table = self._create_table()
+
+ def _create_table(self):
+ pyairtable_req = PyAirtableRequirement()
+ if not pyairtable_req.is_installed():
+ self.logger.debug("Installing PyAirTable from pip")
+ pyairtable_req.install()
+ pyairtable = importlib.import_module("pyairtable")
+ return pyairtable.Table(self.api_key, self.base_id, self.table_name)
 
  @staticmethod
  def _get_read_only_airtable_api_key():

ersilia/setup/requirements/isaura.py

@@ -1,7 +1,7 @@
 import importlib
 from ...utils.terminal import run_command
 
-
+# TODO
 class IsauraRequirement(object):
  def __init__(self):
  self.name = "isaura"

ersilia/setup/requirements/pyairtable.py

@@ -0,0 +1,18 @@
+import importlib
+import sys
+from ...utils.terminal import run_command
+
+class PyAirtableRequirement:
+ def __init__(self):
+ self.name = "pyairtable"
+
+ def is_installed(self):
+ try:
+ importlib.import_module(self.name)
+ return True
+ except:
+ return False
+
+ def install(self):
+ version = '<2' if sys.version_info.minor == 7 else '<3'
+ run_command(f"python -m pip install 'pyairtable{version}'")

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "ersilia"
-version = "0.1.33"
+version = "0.1.34"
 description = "A hub of AI/ML models for open source drug discovery and global health"
 license = "GPLv3"
 authors = ["Ersilia Open Source Initiative <[email protected]>"]
@@ -40,10 +40,6 @@ pandas = [
 ]
 h5py = "^3.7.0" # For compatibility with isaura
 loguru = "^0.6.0" # For compatibility with isaura
-pyairtable = [
- {version="<2", python="3.7.*"},
- {version="<3", python=">=3.8"},
-]
 PyYAML = "^6.0.1"
 dockerfile-parse = "^2.0.1"
 tqdm = "^4.66.1"