in github actions, use conda by default #405
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name: Deploy and test ersilia on PR | |
on: | |
pull_request: | |
branches: [ master ] | |
push: | |
branches: [ master ] | |
workflow_dispatch: | |
permissions: | |
contents: read | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@8f4b7f84864484a7bf31766abe9204da3cbe65b3 # [email protected] | |
- name: Add conda to system path | |
run: echo $CONDA/bin >> $GITHUB_PATH | |
- name: Source conda | |
run: source $CONDA/etc/profile.d/conda.sh | |
- name: Install dependencies | |
run: | | |
source activate | |
conda init | |
conda install git-lfs -c conda-forge | |
git-lfs install | |
conda install gh -c conda-forge | |
- name: Install ersilia | |
run: | | |
source activate | |
python --version | |
echo "After conda init" | |
conda init | |
python -m pip install -e .[test] | |
- name: Deploy models | |
run: | | |
source activate | |
ersilia fetch molecular-weight | |
echo "Serving molecular-weight model." | |
ersilia serve molecular-weight | |
ersilia api calculate -i "CC(=O)OC1=CC=CC=C1C(=O)O" | grep "180.15899" |