CX-RDF

A utility for converting CX to RDF.

Installation

This module has not yet been pushed to PyPI. It can be downloaded and installed from GitHub using Python.

$ python3 -m pip install git+https://github.com/cthoyt/cx_rdf.git

or installed in editable mode like:

$ git clone https://github.com/cthoyt/cx-rdf.git
$ cd cx-rdf
$ python3 -m pip install -e .

The setup.py installs two commands:

cx_to_rdf converts CX documents to RDF using one of three policies:

abstract: RDF is used to represent CX itself, and does not take intuition from the content of CX. This is verbose, but most extensible
aspect: Each aspect is converted individually with some knowledge of the biological meaning of each
predicate: RDF is produced that captures the schema of networks most closely

owl_to_cx is a rudimentary OWL to CX converter that captures subClassOf relationships.

Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
docs		docs
notebooks		notebooks
src/cx_rdf		src/cx_rdf
tests		tests
.bumpversion.cfg		.bumpversion.cfg
.coveragerc		.coveragerc
.flake8		.flake8
.gitignore		.gitignore
.readthedocs.yml		.readthedocs.yml
.travis.yml		.travis.yml
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
README.rst		README.rst
requirements-rtfd.txt		requirements-rtfd.txt
requirements.txt		requirements.txt
setup.py		setup.py
tox.ini		tox.ini