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Pull requests: broadinstitute/gatk
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Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples
#8855
opened Jun 1, 2024 by
ilyasoifer
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Draft
VS-1395 Have create vat from vds optionally take sites only vcf
#8851
opened May 28, 2024 by
gbggrant
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vs 1372 excess alt alleles -- set limit to 3 for a test
#8843
opened May 22, 2024 by
RoriCremer
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Draft
Fixed a bug in AlleleFiltering that ignored more than a single sample
#8841
opened May 18, 2024 by
ilyasoifer
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Mutect2 germline resource can have split multiallelic format
#8837
opened May 16, 2024 by
davidbenjamin
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Retain all source IDs on VariantContext merge + test
#8752
opened Mar 26, 2024 by
lbergelson
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Test out the preview version of the next GKL (DO NOT MERGE)
#8712
opened Mar 4, 2024 by
droazen
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Refactoring a confusing method in GATKVariantContextUtils
#8690
opened Feb 13, 2024 by
lbergelson
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Draft
Reverting the CombineGVCFs and GenotypeGVCFs to the old behavior for no-calls when there are no PLs present.
#8689
opened Feb 13, 2024 by
jamesemery
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LearnReadOrientationModel loads tables for one ref context at a time, reducing memory demands 32x
#8639
opened Jan 4, 2024 by
davidbenjamin
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