eigensoft 8.0.0 #1757
alexregbuild-bottles.yml
on: pull_request
Matrix: build-bottles
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Annotations
17 errors and 6 warnings
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build-bottles (macos-14)
brewsci/bio/eigensoft 8.0.0 did not build
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`brew install --verbose --build-bottle brewsci/bio/eigensoft` failed on macOS Sonoma (14) on Apple Silicon!:
Formula/eigensoft.rb#L36
==> Fetching brewsci/bio/eigensoft
==> Downloading https://github.com/DReichLab/EIG/commit/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
==> Verifying checksum for '2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch'
==> Downloading https://github.com/DReichLab/EIG/commit/a986aad388ade4709d973f647d11fc561edd1f44.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch
==> Verifying checksum for '478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch'
==> Downloading https://github.com/DReichLab/EIG/commit/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
==> Verifying checksum for '69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch'
==> Downloading https://github.com/DReichLab/EIG/archive/refs/tags/v8.0.0.tar.gz
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz
==> Verifying checksum for 'afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz'
==> Installing eigensoft from brewsci/bio
/usr/bin/env tar --extract --no-same-owner --file /Users/runner/Library/Caches/Homebrew/downloads/afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz --directory /private/tmp/homebrew-unpack20240509-9621-m9ok5a
/usr/bin/env cp -pR /private/tmp/homebrew-unpack20240509-9621-m9ok5a/EIG-8.0.0/. /private/tmp/eigensoft-20240509-9621-7gsn6m/EIG-8.0.0
==> Patching
cp -p /Users/runner/Library/Caches/Homebrew/downloads/2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch /private/tmp/eigensoft--patch-20240509-9621-e5mxgp/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
==> Applying 7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-9621-e5mxgp/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
patching file 'src/admutils.c'
cp -p /Users/runner/Library/Caches/Homebrew/downloads/478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch /private/tmp/eigensoft--patch-20240509-9621-xgg80u/a986aad388ade4709d973f647d11fc561edd1f44.patch
==> Applying a986aad388ade4709d973f647d11fc561edd1f44.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-9621-xgg80u/a986aad388ade4709d973f647d11fc561edd1f44.patch
patching file 'src/nicksrc/Makefile'
cp -p /Users/runner/Library/Caches/Homebrew/downloads/69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch /private/tmp/eigensoft--patch-20240509-9621-3i8pu7/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
==> Applying a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-9621-3i8pu7/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
patching file 'CONVERTF/example.perl'
patching file 'CONVERTF/ind2pheno.perl'
patching file 'EIGENSTRAT/example.QTL.perl'
patching file 'EIGENSTRAT/example.oldstyle.perl'
patching file 'EIGENSTRAT/example.perl'
patching file 'POPGEN/elldemo/doplot'
patching file 'POPGEN/elldemo/rescale_ell'
patching file 'POPGEN/example.perl'
patching file 'POPGEN/twexample.perl'
patching file 'bin/evec2pca-ped.perl'
patching file 'bin/evec2pca.perl'
patching file 'bin/gc.perl'
patching file 'bin/ploteig'
patching file 'bin/rescale_ell'
patching file
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build-bottles (macos-14)
1 problem in 1 formula detected.
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build-bottles (macos-14):
Formula/eigensoft.rb#L1
HEAD: Use `branch: "master"` to specify the default branch
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build-bottles (macos-14)
install failed
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build-bottles (macos-14)
Process completed with exit code 1.
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build-bottles (ubuntu-latest)
1 problem in 1 formula detected.
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build-bottles (ubuntu-latest):
Formula/eigensoft.rb#L1
HEAD: Use `branch: "master"` to specify the default branch
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`brew linkage --test brewsci/bio/eigensoft` failed on Linux!:
Formula/eigensoft.rb#L1
Unwanted system libraries:
/lib/x86_64-linux-gnu/libgsl.so.27
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build-bottles (ubuntu-latest)
linkage failed
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build-bottles (ubuntu-latest)
Process completed with exit code 1.
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build-bottles (macos-13)
brewsci/bio/eigensoft 8.0.0 did not build
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`brew install --verbose --build-bottle brewsci/bio/eigensoft` failed on macOS Ventura (13)!:
Formula/eigensoft.rb#L36
==> Fetching brewsci/bio/eigensoft
==> Downloading https://github.com/DReichLab/EIG/commit/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
==> Verifying checksum for '2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch'
==> Downloading https://github.com/DReichLab/EIG/commit/a986aad388ade4709d973f647d11fc561edd1f44.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch
==> Verifying checksum for '478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch'
==> Downloading https://github.com/DReichLab/EIG/commit/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch?full_index=1
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
==> Verifying checksum for '69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch'
==> Downloading https://github.com/DReichLab/EIG/archive/refs/tags/v8.0.0.tar.gz
Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz
==> Verifying checksum for 'afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz'
==> Installing eigensoft from brewsci/bio
/usr/bin/env tar --extract --no-same-owner --file /Users/runner/Library/Caches/Homebrew/downloads/afaed55dc57f89ec168c10673a512d3711c294b0462d2a5229e5f62deb5a777a--EIG-8.0.0.tar.gz --directory /private/tmp/homebrew-unpack20240509-11131-c662uy
/usr/bin/env cp -pR /private/tmp/homebrew-unpack20240509-11131-c662uy/EIG-8.0.0/. /private/tmp/eigensoft-20240509-11131-48krhe/EIG-8.0.0
==> Patching
cp -p /Users/runner/Library/Caches/Homebrew/downloads/2addb07f70ba7fdf6f4d5f0a745f5b2360dbebadab50eeff8e8ac05ac1816dc0--7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch /private/tmp/eigensoft--patch-20240509-11131-vcmpfm/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
==> Applying 7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-11131-vcmpfm/7201ea72b362cf79ed6c88456df0ed5c3590ef87.patch
patching file 'src/admutils.c'
cp -p /Users/runner/Library/Caches/Homebrew/downloads/478e1b2b34e8b122e4e9448ee274c6e8fd008b80f258c803da14ad1a46b223a0--a986aad388ade4709d973f647d11fc561edd1f44.patch /private/tmp/eigensoft--patch-20240509-11131-beb6e1/a986aad388ade4709d973f647d11fc561edd1f44.patch
==> Applying a986aad388ade4709d973f647d11fc561edd1f44.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-11131-beb6e1/a986aad388ade4709d973f647d11fc561edd1f44.patch
patching file 'src/nicksrc/Makefile'
cp -p /Users/runner/Library/Caches/Homebrew/downloads/69a0f008b7dac37a38c30bf41aa199b68297971f61a7e9dc0b62c094d2df5ee0--a5cd7af6560c14b9fea632ff61352ee30c879cff.patch /private/tmp/eigensoft--patch-20240509-11131-ozfug6/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
==> Applying a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
patch -g 0 -f -p1 -i /private/tmp/eigensoft--patch-20240509-11131-ozfug6/a5cd7af6560c14b9fea632ff61352ee30c879cff.patch
patching file 'CONVERTF/example.perl'
patching file 'CONVERTF/ind2pheno.perl'
patching file 'EIGENSTRAT/example.QTL.perl'
patching file 'EIGENSTRAT/example.oldstyle.perl'
patching file 'EIGENSTRAT/example.perl'
patching file 'POPGEN/elldemo/doplot'
patching file 'POPGEN/elldemo/rescale_ell'
patching file 'POPGEN/example.perl'
patching file 'POPGEN/twexample.perl'
patching file 'bin/evec2pca-ped.perl'
patching file 'bin/evec2pca.perl'
patching file 'bin/gc.perl'
patching file 'bin/ploteig'
patching file 'bin/rescale_ell'
patch
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build-bottles (macos-13)
1 problem in 1 formula detected.
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build-bottles (macos-13):
Formula/eigensoft.rb#L1
HEAD: Use `branch: "master"` to specify the default branch
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build-bottles (macos-13)
install failed
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build-bottles (macos-13)
Process completed with exit code 1.
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build-bottles (macos-14)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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build-bottles (macos-14)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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build-bottles (ubuntu-latest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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build-bottles (ubuntu-latest)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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build-bottles (macos-13)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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build-bottles (macos-13)
No files were found with the provided path: *.bottle.*. No artifacts will be uploaded.
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