The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

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==> Fetching brewsci/bio/relion ==> Downloading https://github.com/3dem/relion/archive/4.0.1.tar.gz Already downloaded: /Users/runner/Library/Caches/Homebrew/downloads/87cd3c551bae0a2d3e123a99c3a4dda34f6956e773fc6cf99d02b7fa5627b38f--relion-4.0.1.tar.gz ==> Verifying checksum for '87cd3c551bae0a2d3e123a99c3a4dda34f6956e773fc6cf99d02b7fa5627b38f--relion-4.0.1.tar.gz' ==> Installing relion from brewsci/bio /usr/bin/env tar --extract --no-same-owner --file /Users/runner/Library/Caches/Homebrew/downloads/87cd3c551bae0a2d3e123a99c3a4dda34f6956e773fc6cf99d02b7fa5627b38f--relion-4.0.1.tar.gz --directory /private/tmp/d20230920-7206-1p7d0yk /usr/bin/env cp -pR /private/tmp/d20230920-7206-1p7d0yk/relion-4.0.1/. /private/tmp/relion-20230920-7206-1ad300v/relion-4.0.1 ==> cmake -S . -B build -DFETCH_TORCH_MODELS=OFF-DOpenMP_C_FLAGS=-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include-DOpenMP_C_LIB_NAMES=omp-DOpenMP_CXX_FLAGS=-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include-DOpenMP_CXX_LIB_NAMES=omp-DOpenMP_omp_LIBRARY=/usr/local/opt/libomp/lib/libomp.a -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/relion/4.0.1 -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_BUILD_TYPE=Release -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DBUILD_TESTING=OFF -DCMAKE_OSX_SYSROOT=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -- The C compiler identification is AppleClang 14.0.0.14000029 -- The CXX compiler identification is AppleClang 14.0.0.14000029 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- BUILD TYPE set to 'Release' -- Setting fallback CUDA_ARCH=50 -- CUDA enabled - Building CUDA-accelerated version of RELION -- Setting cpu precision to double -- Setting accelerated code precision to single CUDA_TOOLKIT_ROOT_DIR not found or specified -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) -- Using non-cuda compilation.... -- Found MPI_C: /usr/local/lib/libmpi.dylib (found version "3.1") -- Found MPI_CXX: /usr/local/lib/libmpi.dylib (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- MPI_INCLUDE_PATH : /usr/local/Cellar/open-mpi/4.1.5/include;/usr/local/include -- MPI_LIBRARIES : /usr/local/lib/libmpi.dylib -- MPI_CXX_INCLUDE_PATH : /usr/local/Cellar/open-mpi/4.1.5/include;/usr/local/include -- MPI_CXX_LIBRARIES : /usr/local/lib/libmpi.dylib -- CMAKE_C_COMPILER : /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang -- CMAKE_CXX_COMPILER : /usr/local/Homebrew/Library/Homebrew/shims/mac/super/clang++ -- MPI_C_COMPILER : /usr/local/bin/mpicc -- MPI_CXX_COMPILER : /usr/local/bin/mpicxx -- CMAKE_CXX_COMPILER_ID : Clang -- Found X11: /usr/local/include -- Looking for XOpenDisplay in /usr/local/lib/libX11.dylib -- Looking for XOpenDisplay in /usr/local/lib/libX11.dylib - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found FLTK: /usr/local/lib/libfltk_images.dylib;/usr/local/lib/libfltk_forms.dylib;/usr/local/lib/libfltk.dylib -- X11 and FLTK were found -- FLTK_LIBRARIES: -framework Carbon -framework Cocoa -framework ApplicationServices -lz;/usr/local/lib/libfltk_images.dylib;/usr/local/lib/libfltk_forms.dylib;/usr/local/lib/libfltk.dylib -- Found FFTW -- FFTW_PATH: /usr/local/include -- FFTW_INCLUDES: /usr/local/include -- FFTW_LIBRARIES: /usr/local/lib/libfftw3f.dylib;/usr/local/lib/libfftw3.dylib -- Looking for sincos -- Looking for sincos - not found -- Loo