Update Data #1373
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Update Data | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 0 * * SAT" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name != 'schedule' || github.repository == 'biopragmatics/bioregistry' }} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token | |
| fetch-depth: 0 # otherwise, you will failed to push refs to dest repo | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| pip install "tox<4.0.0" | |
| ############ | |
| # UPDATE # | |
| ############ | |
| - name: Create local changes | |
| id: update | |
| run: | | |
| tox -e update | |
| env: | |
| BIOPORTAL_API_KEY: ${{ secrets.BIOPORTAL_API_KEY }} | |
| ECOPORTAL_API_KEY: ${{ secrets.ECOPORTAL_API_KEY }} | |
| AGROPORTAL_API_KEY: ${{ secrets.AGROPORTAL_API_KEY }} | |
| FAIRSHARING_LOGIN: ${{ secrets.FAIRSHARING_LOGIN }} | |
| FAIRSHARING_PASSWORD: ${{ secrets.FAIRSHARING_PASSWORD }} | |
| NDEX_USERNAME: ${{ secrets.NDEX_USERNAME }} | |
| NDEX_PASSWORD: ${{ secrets.NDEX_PASSWORD }} | |
| - name: Check environment | |
| run: echo ${{ steps.update.outputs.BR_UPDATED }} | |
| - name: Commit files | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git commit --all -m "馃摦 Automatically update" | |
| # Not sure if this should be here or not - what if it pushes something bad that needs to be reverted? | |
| # - name: Push changes | |
| # if: steps.update.outputs.BR_UPDATED == 'true' | |
| # uses: ad-m/github-push-action@master | |
| # with: | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # branch: ${{ github.ref }} | |
| # tags: true | |
| - name: Run tests, don't push to PyPI unless passing | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e py | |
| ################## | |
| # MARK RELEASE # | |
| ################## | |
| - name: bump2version release | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e bumpversion-release | |
| ########## | |
| # PyPI # | |
| ########## | |
| - name: Release to PyPI | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e release | |
| env: | |
| TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| - name: bump2version patch | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e bumpversion patch | |
| - name: Push changes | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} | |
| tags: true | |
| - name: Sleep to avoid race conditions | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| sleep 300 | |
| ############ | |
| # DOCKER # | |
| ############ | |
| - name: Set up QEMU | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Login to DockerHub | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| id: docker_build | |
| uses: docker/build-push-action@v2 | |
| with: | |
| push: true | |
| # See: https://github.com/docker/build-push-action/blob/master/docs/advanced/multi-platform.md | |
| platforms: linux/amd64,linux/arm64 | |
| tags: biopragmatics/bioregistry:latest | |
| - name: Image digest | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: echo ${{ steps.docker_build.outputs.digest }} |