Skip to content
View biochunan's full-sized avatar

Highlights

  • Pro
Block or Report

Block or report biochunan

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
biochunan/README.md

Hi there πŸ‘‹

My name is Chu'nan Liu (刘ζ₯šε—). I am a PhD student in bioinformatics at the University College London. I develop computational tools and build datasets to study antibody-antigen interactions. I am also interested in the application of deep learning in structural bioinformatics.

I am open to collaborations on structural bioinformatics, protein datasets, geometric deep learning, etc. Feel free to reach out via email, LinkedIn, or Twitter.

πŸ”­ I’m currently working on



  • Nov 13-16, 2023: I present the above work at PEGS Europe 2023 in Lisbon, Portugal πŸ‡΅πŸ‡Ή.
    • πŸ“Š Check out the poster here





  • I host a 3D viewer for antibody-antigen interface analysis.
    • πŸ‘€ Check it out at AsEP

Pinned Loading

  1. esmfold-docker-image esmfold-docker-image Public

    Create a docker image for running ESMFold, solved conflicts between ESMFold and OpenFold dependencies

    Dockerfile 7 4

  2. seqres2atmseq seqres2atmseq Public

    Align the SEQRES sequence with the ATMSEQ sequence of a protein chain and output a list of mask (0: a missing residue in the ATMSEQ; 1: match)

    Python

  3. CDRConformationClassification CDRConformationClassification Public

    Antibody CDR loop conformation clusteirng using Affinity Propagation

    Python

  4. graphein graphein Public

    Forked from a-r-j/graphein

    Protein Graph Library

    Jupyter Notebook

  5. Convert2vscSnippet Convert2vscSnippet Public

    a simple shell script to convert a piece of code to vscode snippet

    Python

  6. AsEP-dataset AsEP-dataset Public

    NeurIPS 2024 Dataset and Benchmark Submission "AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction"

    Jupyter Notebook 1