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Translating the immune response into simple diagnostic insights
πŸ‘¨β€πŸ”¬
Translating the immune response into simple diagnostic insights
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amirnakar/README.md

Amir Nakar

I work for MeMed, a med-tech company developing a diagnostic tool based on host immune response.

We're using the host response to diagnose patients and reduce antibiotic overuse πŸ©ΊπŸ’ŠπŸ¦  In my role as Scientific Affairs Lead I help establish international research collaborations, write papers about MeMed's latest clinical trial results and search for future funding opportunities

I did my PhD at Leibniz Institute of Photonic Technology, in Juergen Popp's group, working on research and development of innovative optical/photonic tools for point-of-care microbial diagnostics.

I used to teach at Friedrich Schiller UniversitΓ€t Jena - courses on Biophotonics and Raman spectroscopy

You can find me on:

LinkedIn Β  Twitter Β  ResearchGate Β  Scholar Β 

πŸ’» I like to work with

RStats Python

πŸ” Research Tools Everyone Should Know:

πŸ“š Books I Recently read

Past Projects

CARBATECH - Bacterial Diagnostics πŸ’ŠπŸ”¬πŸ¦ 

Between 2019-2021, I worked on medical applications of Raman spectroscopy. The work was done with a wonderful team, under the supervision of Prof. Juergen Popp and Dr. Petra Roesch

We were trying to use Raman spectroscopy for fast diagnostics of antibiotic resistant bacteria in hospitals.

In our work, we collected spectra directly from bacterial cells, and used machine learning algorithms (such as SVMs) to predict whether those bacteria are resistant to drugs. The idea --> to help doctors be able to prescribe the right drug πŸ’Š, to kill off the infection 🦠 - FAST!

πŸ“„ Peer Reviewed Publications:

  1. Nakar et al. 2022 - Detection of multi-resistant clinical strains of E. coli with Raman spectroscopy
  2. Nakar et al. 2022 - Label‐free Differentiation of clinical E. coli and Klebsiella isolates with Raman Spectroscopy
  3. Nakar et al. 2022 - Raman spectroscopy for the differentiation of Enterobacteriaceae: a comparison of two methods†

βš™ Private repos:

Enterobacteriacea | Klebsiella | E. coli Resistance | Sepsis | Raman Pipeline

✍🏼 You can read about our work here:

Fast Detection of Water Contaminations πŸ’¦πŸŒˆπŸ§«

Between 2016-2018 I worked in Volcani Center. I was part of an interdisciplinary team which used fluorescence spectroscopy to detect water contaminations.

In that project, we collected water πŸ’§ from different source wells and measured a huge spectrum 🌈 of auto-fluorescent signals. Using machine learning, we managed to identify the contaminations at X10 below the minimum required range, both in lab models and in our real collected water. That project was part of a collaboration with mekorot

πŸ“„ Peer Reviewed Publication:

βš™ Private repos:

Water |

✍🏼 You can read more about our work here:

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Quick Links for me

Tidyverse | ggplot | Goodreads Scratchboard|

Pinned

  1. scratchboard scratchboard Public

    All my little scripts for little things

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