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@ViennaRNA

ViennaRNA

Software and Documents from the Theoretical Biochemistry Institute, University of Vienna

Popular repositories

  1. ViennaRNA ViennaRNA Public

    The ViennaRNA Package

    C 280 77

  2. forna forna Public

    Create force-directed graphs of RNA secondary structures.

    JavaScript 94 30

  3. forgi forgi Public

    An RNA manipulation library.

    Python 47 31

  4. RNAcode RNAcode Public

    RNAcode - Detecting protein coding genes in multiple sequence alignment

    C 24 8

  5. fornac fornac Public

    A container for the forna visualization software.

    JavaScript 19 14

  6. RNAsketch RNAsketch Public

    Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.

    Python 18 3

Repositories

Showing 10 of 36 repositories
  • fornac Public

    A container for the forna visualization software.

    ViennaRNA/fornac’s past year of commit activity
    JavaScript 19 Apache-2.0 14 14 1 Updated May 30, 2024
  • ViennaRNA Public

    The ViennaRNA Package

    ViennaRNA/ViennaRNA’s past year of commit activity
    C 280 77 44 3 Updated May 21, 2024
  • ViennaRNA/RRIdesign’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 27, 2024
  • forgi Public

    An RNA manipulation library.

    ViennaRNA/forgi’s past year of commit activity
    Python 47 GPL-3.0 31 12 0 Updated Feb 16, 2024
  • ernwin Public

    Sample and predict coarse grain 3D RNA structures

    ViennaRNA/ernwin’s past year of commit activity
    Python 8 AGPL-3.0 5 3 0 Updated Feb 12, 2024
  • drtransformer Public Forked from bad-ants-fleet/drtransformer

    Heuristic cotranscriptional folding using the nearest neighbor energy model.

    ViennaRNA/drtransformer’s past year of commit activity
    Python 2 MIT 5 1 0 Updated Sep 11, 2023
  • drforna Public

    Interactive visualization of cotranscriptional folding

    ViennaRNA/drforna’s past year of commit activity
    JavaScript 6 Apache-2.0 2 4 0 Updated Aug 3, 2023
  • ViennaRNA/softconsensus’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 23, 2023
  • salty Public

    Tutorial like notebook to use salt option in RNAlib

    ViennaRNA/salty’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 8, 2023
  • PLfoldSampling Public

    RNAPLfold revisited

    ViennaRNA/PLfoldSampling’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 6, 2023

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