Export adtype AutoTapir
#2236
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Export adtype AutoTapir
#2236
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Pull Request Test Coverage Report for Build 9238257061Details
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yebai
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Jun 3, 2024
* Update README.md * Export adtype `AutoTapir` (#2236) * Export adtype `AutoTapir` * Update Project.toml * Fix missing AutoTapir (#2242) * Update Essential.jl * Update Project.toml * Drop support for ADTypes 0.2 (#2243) ADTypes 0.2 doesn't support AutoTapir yet. * Optimization improvements (#2221) * initial work on interface * Improving the Optimization.jl interface, work in progress * More work on Optimization.jl, still in progress * Add docstrings to Optimisation.jl * Fix OptimizationOptimJL version constraint * Clean up optimisation TODO notes * Relax OptimizationOptimJL version constraints * Simplify optimization imports * Remove commented out code * Small improvements all over in optimisation * Clean up of Optimisation tests * Add a test for OptimizationBBO * Add tests using OptimizationNLopt * Rename/move the optimisation test files The files for Optimisaton.jl and OptimInterface.jl were in the wrong folders: One in `test/optimisation` the other in `test/ext`, but the wrong way around. * Relax compat bounds on OptimizationBBO and OptimizationNLopt * Split a testset to test/optimisation/OptimisationCore.jl * Import AbstractADType from ADTypes, not SciMLBase * Fix Optimization.jl depwarning * Fix seeds in more tests * Merge OptimizationCore into Optimization * In optimisation, rename init_value to initial_params * Optimisation docstring improvements * Code style adjustments in optimisation * Qualify references in optimisation * Simplify creation of ModeResults * Qualified references in optimization tests * Enforce line length in optimization * Simplify optimisation exports * Enforce line legth in Optim.jl interface * Refactor away ModeEstimationProblem * Style and docstring improvements for optimisation * Add := test to optimisation tests. * Clarify comment * Simplify generate_initial_params * Fix doc references * Rename testsets * Refactor check_success * Make initial_params a kwarg * Remove unnecessary type constrain on kwarg * Fix broken reference in tests * Fix bug in generate_initial_params * Fix qualified references in optimisation tests * Add hasstats checks to optimisation tests * Extend OptimizationOptimJL compat to 0.3 Co-authored-by: Hong Ge <[email protected]> * Change some `import`s to `using` Co-authored-by: Tor Erlend Fjelde <[email protected]> * Change <keyword arguments> to kwargs... in docstrings * Add a two-argument method to OptimLogDensity as callable --------- Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Hong Ge <[email protected]> * Update Project.toml * CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package test, (keep existing compat) (#2246) Co-authored-by: CompatHelper Julia <[email protected]> --------- Co-authored-by: Markus Hauru <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: CompatHelper Julia <[email protected]>
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mhauru
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Jun 5, 2024
* Remove unused test util function * Refactoring ad and optiminterface tests to modules * Add SelectiveTests.jl * Rework tests CI GA * Switch test CI on Mac back to x64 * Remove coverage from CI. Improve matrix. * Wrap all tests in modules. * Remove unused test utils * Remove GA workflows for DynamicHMC and Numerical * Rename TuringCI GA to Tests * Fix test_args passing in CI * Fix for CI test matrix * Fixes to various test files * Add container.jl to test suite * Fix spacing around * in test includes * Split ad.jl and abstractmcmc.jl tests to separate CI jobs * Alphabetise imports in tests * In tests, use import X over using X: X * Add missing imports to abstractmcmc.jl tests * Add some missing imports to tests * Merge ad_utils.jl to ad.jl in tests * Merge testing_functions.jl into mh.jl in tests * Simplify test_utils Turn all of them into modules or merge them into other files that used to `include` them. * Add missing import to numerical_tests.jl * Update Project.toml (#2244) * Update README.md * Export adtype `AutoTapir` (#2236) * Export adtype `AutoTapir` * Update Project.toml * Fix missing AutoTapir (#2242) * Update Essential.jl * Update Project.toml * Drop support for ADTypes 0.2 (#2243) ADTypes 0.2 doesn't support AutoTapir yet. * Optimization improvements (#2221) * initial work on interface * Improving the Optimization.jl interface, work in progress * More work on Optimization.jl, still in progress * Add docstrings to Optimisation.jl * Fix OptimizationOptimJL version constraint * Clean up optimisation TODO notes * Relax OptimizationOptimJL version constraints * Simplify optimization imports * Remove commented out code * Small improvements all over in optimisation * Clean up of Optimisation tests * Add a test for OptimizationBBO * Add tests using OptimizationNLopt * Rename/move the optimisation test files The files for Optimisaton.jl and OptimInterface.jl were in the wrong folders: One in `test/optimisation` the other in `test/ext`, but the wrong way around. * Relax compat bounds on OptimizationBBO and OptimizationNLopt * Split a testset to test/optimisation/OptimisationCore.jl * Import AbstractADType from ADTypes, not SciMLBase * Fix Optimization.jl depwarning * Fix seeds in more tests * Merge OptimizationCore into Optimization * In optimisation, rename init_value to initial_params * Optimisation docstring improvements * Code style adjustments in optimisation * Qualify references in optimisation * Simplify creation of ModeResults * Qualified references in optimization tests * Enforce line length in optimization * Simplify optimisation exports * Enforce line legth in Optim.jl interface * Refactor away ModeEstimationProblem * Style and docstring improvements for optimisation * Add := test to optimisation tests. * Clarify comment * Simplify generate_initial_params * Fix doc references * Rename testsets * Refactor check_success * Make initial_params a kwarg * Remove unnecessary type constrain on kwarg * Fix broken reference in tests * Fix bug in generate_initial_params * Fix qualified references in optimisation tests * Add hasstats checks to optimisation tests * Extend OptimizationOptimJL compat to 0.3 Co-authored-by: Hong Ge <[email protected]> * Change some `import`s to `using` Co-authored-by: Tor Erlend Fjelde <[email protected]> * Change <keyword arguments> to kwargs... in docstrings * Add a two-argument method to OptimLogDensity as callable --------- Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: Hong Ge <[email protected]> * Update Project.toml * CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package test, (keep existing compat) (#2246) Co-authored-by: CompatHelper Julia <[email protected]> --------- Co-authored-by: Markus Hauru <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: CompatHelper Julia <[email protected]> * Set fail-fast: false for CI test matrix * Add a step to print matrix variables to tests Action * Fix typo in tests Action * ADTypes v0.2 compatibility for test restructuring (#2253) * Restore compat with ADTypes v0.2. Make AutoTapir export conditional. * Fix AutoTapir export in Essential.jl --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Tor Erlend Fjelde <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: CompatHelper Julia <[email protected]>
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Export the
AutoTapiradtype.https://github.com/withbayes/Tapir.jl