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Collection of scripts for improving lipid constraints in yeast-GEM

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SLIMEr.png

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Collection of scripts for adding SLIME (Split Lipids Into Measurable Entities) reactions into the genome-scale model of yeast. For more info, refer to the publication in BMC Systems Biology.

Last update: 2019-10-21

This repository is administered by Benjamin J. Sanchez (@BenjaSanchez), Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology.

Installation

Required Software:

  • A functional Matlab installation (R2016b or higher).
  • The COBRA toolbox for MATLAB.
  • For performing the lipid validation: optGpSampler downloaded and unzipped in /simulations. Make sure the path to your solver is in your system path variable.

Dependencies - Recommended Software:

Contributors