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TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).

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TreeKnit

TreeKnit is a Julia package that performs the inference of Ancestral Reassortment Graph for segmented genomes (typically, human influenza). Documentation is available here.

The complete description of the algorithm is available at

TreeKnit: Inferring Ancestral Reassortment Graphs of influenza viruses
Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher bioRxiv 2021.12.20.473456; doi: https://doi.org/10.1101/2021.12.20.473456

Please cite this article if you use TreeKnit!

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TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).

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