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@PathoGenOmics-Lab

PathoGenOmics Lab

An interdisciplinary research group dedicated to unraveling the complexities of microbial pathogens and their relationships with hosts.

Popular repositories

  1. VIPERA VIPERA Public

    A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

    Python 3

  2. mycolorsTB mycolorsTB Public

    R Color package for Mycobacterium tuberculosis complex

    R 3

  3. getNCBImetadata getNCBImetadata Public

    🪛 Fetch ncbi metadata for sra and assemblies

    Python

  4. transcluster transcluster Public

    A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny

    Python

  5. misb_training_2024 misb_training_2024 Public

    Master on Integrative Synthetic Biology (MISB) training sessions 2024

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • misb_training_2024 Public

    Master on Integrative Synthetic Biology (MISB) training sessions 2024

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 15, 2024
  • VIPERA Public

    A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

    Python 3 GPL-3.0 0 0 0 Updated Apr 17, 2024
  • mycolorsTB Public

    R Color package for Mycobacterium tuberculosis complex

    R 3 GPL-3.0 0 0 0 Updated Apr 4, 2024
  • getNCBImetadata Public

    🪛 Fetch ncbi metadata for sra and assemblies

    Python 0 GPL-3.0 0 0 0 Updated Jan 28, 2024
  • transcluster Public

    A Snakemake pipeline to find SARS-CoV-2 clusters in a reference phylogeny

    Python 0 GPL-3.0 0 0 0 Updated Sep 18, 2023

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