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@Pappulab

Pappu Lab

Github repository for Rohit Pappu's lab at Washington University in St. Louis

Popular repositories

  1. localCIDER localCIDER Public

    localCIDER - sequence analysis tool for disordered protein sequences

    Python 20 14

  2. LASSI LASSI Public

    LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

    C 14 6

  3. xdrf xdrf Public

    This directory contains source of the portable data compression library xdrf, which was developed for EUROPORT.

    M4 7 4

  4. damfret_classifier damfret_classifier Public

    This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.

    Python 2

  5. Data-and-Analysis-for-PLCD-Mixtures Data-and-Analysis-for-PLCD-Mixtures Public

    Data and Analysis code used in the following paper: "Phase Separation of Protein Mixtures is Driven by the Interplay of Homotypic and Heterotypic Interactions"

    Cython 2

  6. simprep simprep Public

    correct salt concentration for a CAMPARI simulation correct salt concentration for a CAMPARI simulation

    Python 1 2

Repositories

Showing 10 of 19 repositories
  • metastable-condensates Public
    Pappulab/metastable-condensates’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 11, 2024
  • material_properties Public

    Data repository and analysis routines used to study material properties of prion-like low-complexity domains as described in https://doi.org/10.1101/2023.04.06.535902

    Pappulab/material_properties’s past year of commit activity
    MATLAB 1 0 0 0 Updated May 13, 2024
  • n130-liquid-structure Public

    Data and analyses scripts used for `doi:10.1038/s41467-024-47602-z`

    Pappulab/n130-liquid-structure’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 29, 2024
  • Glutamate_vs_Chloride_Clustering Public
    Pappulab/Glutamate_vs_Chloride_Clustering’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 19, 2024
  • King-etal-Nucleoli Public

    This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at SSRN: https://ssrn.com/abstract=4520791 or http://dx.doi.org/10.2139/ssrn.4520791

    Pappulab/King-etal-Nucleoli’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 15, 2024
  • xdrf Public

    This directory contains source of the portable data compression library xdrf, which was developed for EUROPORT.

    Pappulab/xdrf’s past year of commit activity
    M4 7 MIT 4 2 0 Updated Jan 6, 2024
  • FIREBALL Public

    A suite of computational tools for constructing, analyzing, and fitting phase diagrams and coil-to-globule transitions.

    Pappulab/FIREBALL’s past year of commit activity
    Python 1 LGPL-3.0 1 0 0 Updated Nov 1, 2023
  • dynamical-control Public

    This GitHub repository contains the code and data for the manuscript "Dynamical control enables the formation of demixed biomolecular condensates" (BioRxiv link: https://www.biorxiv.org/content/10.1101/2023.01.04.522702v1)

    Pappulab/dynamical-control’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 26, 2023
  • Data-and-Analysis-for-PLCD-Mixtures Public

    Data and Analysis code used in the following paper: "Phase Separation of Protein Mixtures is Driven by the Interplay of Homotypic and Heterotypic Interactions"

    Pappulab/Data-and-Analysis-for-PLCD-Mixtures’s past year of commit activity
    Cython 2 0 0 0 Updated Aug 13, 2023
  • localCIDER Public

    localCIDER - sequence analysis tool for disordered protein sequences

    Pappulab/localCIDER’s past year of commit activity
    Python 20 GPL-2.0 14 0 0 Updated May 15, 2023
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