bugfix proper naming of uncropped tifs upon export

not cropped tifs exported with cropped in name
MannLabs · Feb 7, 2024 · 42ee238 · 42ee238
1 parent bdbc3db
commit 42ee238
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/sparcstools/stitch.py b/src/sparcstools/stitch.py
@@ -422,7 +422,7 @@ def _assemble_mosaic(mosaic, crop = crop):
  for i, channel in enumerate(slide.metadata.channel_map.values()):
 
  #save using tifffile library to ensure compatibility with very large tif files
- imsave(os.path.join(outdir, slidename + "_"+channel+'_cropped.tif'), merged_array[i].astype('uint16'))
+ imsave(os.path.join(outdir, slidename + "_"+channel+'.tif'), merged_array[i].astype('uint16'))
 
  if export_XML:
  _write_xml(outdir, slide.metadata.channel_map.values(), slidename, cropped = False)