update to sparcs

MannLabs · Jun 1, 2023 · 817bc23 · 817bc23
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diff --git a/README.md b/README.md
@@ -17,7 +17,7 @@ cd SPARCSpy
 
 conda create -n "SPARCSpy"
 conda activate SPARCSpy
-conda install python=3.9 scipy 'scikit-image>=0.19' scikit-fmm cellpose numpy numba -c conda-forge
+conda install python=3.9 scipy 'scikit-image>=0.19' scikit-fmm cellpose opencv numba -c conda-forge
 ```
 
 In case you wish to utilize the ML capabilities of SPARCSpy (either for segmentation or classification) please follow the instructions [here](<https://pytorch.org/get-started/locally/>) to install pytorch correctly for your operating system. Once completed you can verify that pytorch is installed correctly by executing the following python code (you can access the python console by typing `python` and exit it when you are finished by entering `exit()`):
@@ -38,6 +38,12 @@ tensor([[0.3380, 0.3845, 0.3217],
  [0.4675, 0.3947, 0.1426]])
 ```
 
+Once you have installed pytorch according to the instructions we still need to install pytorch lightning. To do this run:
+
+```
+conda install -c conda-forge pytorch-lightning
+```
+
 Once these steps are completed you can proceed to install the SPARCSpy package via pip:
 
 ```

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