Reorganize folder structure

0_init.sh

@@ -1,4 +1,10 @@
-# These scripts have been run via bash on both Ubuntu 18.04 LTS and Raspbian 9.8
+# Copyright © 2019 LouisSung.
+# All rights reserved.
+
+# These scripts have been run on Ubuntu 18.04 LTS via bash
+# Require sudo privileges in order to install packages
+# Update Python version if needed, e.g., Python >=3.6
+
 echo -e "\e[1;36mSet Up Environment\e[0m"
 
 # === Parameters ===

1_gen_paper.sh

@@ -1,16 +1,24 @@
+# Copyright © 2019 LouisSung.
+# All rights reserved.
+
 echo -e "\e[1;36mGenerate Paper PDF\e[0m"
 
+# export tex, bib, and bst path to env
+export TEXINPUTS=.//:
+export BIBINPUTS=.//:
+export BSTINPUTS=.//:
+
 BUILD_DIR='build/'
 PAPER='Paper'
 
-if [ ! -f "$BUILD_DIR$PAPER.aux" ]; then # make sure to ref citation for the first build
- pdflatex -output-directory=$BUILD_DIR $PAPER.tex > /dev/null; fi
-if [[ -n $(find ./ -name "*.bib") ]]; then # build BibTex if exist
+if [[ -n $(find ./ -name '*.bib') ]]; then # build BibTex if exist
+ pdflatex -output-directory=$BUILD_DIR $PAPER.tex > /dev/null
  bibtex $BUILD_DIR$PAPER.aux > /dev/null
  pdflatex -output-directory=$BUILD_DIR $PAPER.tex > /dev/null
 fi
- 
+
 pdflatex -output-directory=$BUILD_DIR $PAPER.tex > /dev/null
+
 # print important msg only
 echo "\
 log

2_gen_diff.sh

@@ -1,3 +1,6 @@
+# Copyright © 2019 LouisSung.
+# All rights reserved.
+
 echo -e "\e[1;36mGenerate Diff PDFs\e[0m"
 
 cd diff/

3_run_texmaker.sh

@@ -0,0 +1,10 @@
+# Copyright © 2019 LouisSung.
+# All rights reserved.
+
+# export tex, bib, and bst path to env
+export TEXINPUTS=.//:
+export BIBINPUTS=.//:
+export BSTINPUTS=.//:
+
+# run texmaker in the background
+texmaker &

diff/gen_diff.py

@@ -7,7 +7,12 @@
 
 This script requires 'git', 'latexdiff', 'bibtex', and 'pdflatex' package.
 """
-import binascii, git, os, shutil, subprocess
+try:
+ import binascii, git, os, pathlib, shutil, subprocess
+except ModuleNotFoundError:
+ import subprocess
+ subprocess.run(["pipenv", "install"])
+ import binascii, git, os, pathlib, shutil
 
 __author__ = "Louis Sung"
 __copyright__ = "Copyright © 2019 LouisSung. All rights reserved."
@@ -17,6 +22,7 @@
 MAX_AUTHORS = 2
 dir_diff = "diff/"
 tex_paper = "Paper.tex"
+set_env = "export TEXINPUTS=.//:;export BIBINPUTS=.//:;export BSTINPUTS=.//:"
 
 # Preprocess target folders and file names
 _tmp = binascii.b2a_hex(os.urandom(4)).decode() # tmp name for folders
@@ -66,21 +72,26 @@
  # execute latexdiff and pdflatex
  with open(os.devnull, "w") as null:
  # generate old & new bbl files
- subprocess.run("cd {0}; pdflatex {1}".format(
- dir_new, tex_paper), shell=True, stdout=null)
- subprocess.run("cd {0}; bibtex {1}".format(
- dir_new, tex_paper[:-3] + "aux"), shell=True, stdout=null)
- subprocess.run("cd {0}; pdflatex {1}".format(
- dir_old, tex_paper), shell=True, stdout=null)
- subprocess.run("cd {0}; bibtex {1}".format(
- dir_old, tex_paper[:-3] + "aux"), shell=True, stdout=null)
+ subprocess.run("cd {0}; {1}; pdflatex {2}".format(
+ dir_new, set_env, tex_paper), shell=True, stdout=null)
+ subprocess.run("cd {0}; {1}; bibtex {2}".format(
+ dir_new, set_env, tex_paper[:-3] + "aux"), shell=True, stdout=null)
+ subprocess.run("cd {0}; {1}; pdflatex {2}".format(
+ dir_old, set_env, tex_paper), shell=True, stdout=null)
+ subprocess.run("cd {0}; {1}; bibtex {2}".format(
+ dir_old, set_env, tex_paper[:-3] + "aux"), shell=True, stdout=null)
 
  # generate diff tex
  with open(dir_new + file_diff + ".tex", "w") as w_diff:
+ # move all files to root directory
+ for d in (dir_new, dir_old):
+ for file in pathlib.Path(d).rglob("*.*"):
+ if str(file.parent) != d[:-1]:
+ shutil.move(os.path.join(str(file)),
+ os.path.join(d, file.name))
  subprocess.run("latexdiff --flatten -p {0} {1} {2}".format(
- "{0}._p{1}.tex".format(
- dir_diff, min(_authors[author], MAX_AUTHORS)),
- tex_old, tex_new), shell=True, stdout=w_diff, stderr=null)
+ preamble, tex_old, tex_new),
+ shell=True, stdout=w_diff, stderr=null)
 
  # generate diff pdf
  subprocess.run("cd {0}; pdflatex -interaction=nonstopmode {1}".format(