A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas.
Please read CONTRIBUTING if you wish to add a awesome list of resources.
| Resource | Description |
|---|---|
| Awesome | Awesome lists about all kinds of interesting topics: Programming, Computer Science, Big Data, Databases, Learn, Front-End/Back-End Development, etc. |
| Awesome 10x Genomics | This list attempts to gather tools related to the GEMCode/Chromium platforms from 10x Genomics. |
| Awesome Alternative Splicing | This is a resource for software and information about alternative splicing. |
| Awesome Awesomeness | A curated list of amazingly awesome awesomeness (i.e. similar to this repository but with broader topics with a focus on programming and general ressources). |
| Awesome Big Data | A curated list of awesome big data frameworks, resources and other awesomeness. |
| Awesome Bio Go | List of Bioinformatics Software Written in the Go Language. |
| Awesome Bioinformatics | A curated list of awesome Bioinformatics software, resources, and libraries. Mostly command line based, and free or open-source. |
| Awesome Bioinformatics Benchmarks | A curated list of bioinformatics benchmarking papers and resources. |
| Awesome Bioinformatics Education | A curated list of resources specific to learning bioinformatics. |
| Awesome Bioinformatics Tools | A curated list of awesome Bioinformatics software, tools and resources. |
| Awesome Cancer Variant Databases | A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer and normal variants. |
| Awesome Community Bioinformatics | A curated list of awesome communities in bioinformatics and related fields. |
| Awesome CRISPR | List of software/websites/databases/papers for genome engineering, including (but not limited to) guide design, genome editing outcome, screening analysis, etc. |
| Awesome Data Science | An open-source Data Science repository to learn and apply towards solving real world problems. |
| Awesome Expression Browser | A curated list of software and resources for exploring and visualizing (browsing) expression data, but not only limited to that. |
| Awesome Genome Annotation | A curated list of awesome genome annotation tools. |
| Awesome Genome Visualization | A list of interesting genome visualizers, genome browsers, or genome-browser-like implementations. |
| Awesome ggplot2 | Resources related to ggplot2 |
| Awesome Quarto | The most up to date curated list of Quarto® docs, talks, tools, examples & articles the internet has to offer |
| Awesome Machine Learning | A curated list of awesome machine learning frameworks, libraries and software (by language). |
| Awesome Microbes | List of resources, including software packages (and the people developing these methods) for microbiome (16S), metagenomics (WGS, Shot-gun sequencing), and pathogen identification/detection/characterization. |
| Awesome Multi-omics | A community-maintained list of software packages for multi-omics data analysis. |
| Awesome Nextflow | A curated list of Nextflow pipelines |
| Awesome Package Manager | A list of package manager. |
| Awesome Pipeline | A curated list of awesome pipeline toolkits. |
| Awesome Python | An opinionated list of awesome Python frameworks, libraries, software and resources. |
| Awesome Public Datasets | This is a list of topic-centric public data sources in high quality |
| Awesome R | A curated list of awesome R packages and tools. |
| Awesome R Learning Resources | A curated list of R Learning Resources |
| Awesome R Package Development Tools | A curated list of R Package Development Tools |
| Awesome Single Cell | List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. |
| Awesome Sysadmin | A curated list of amazingly awesome open source sysadmin resources. |
| Awosome Bioinformatics | A curated list of resources for learning bioinformatics. Some of this repo resources were collected by BioInstaller project. |
| Bioinformatics notes | Awesome bioinformatics learning and data analysis tips and tricks. |
| Glittr | a web app that list bioinformatics training materials available on GitHub and GitLab |
| Genome Assembly Tools | Awesome list of genome assembly tools |
| Long Read Tools | A catalogue of available long read sequencing data analysis tools. |
| Python Graph Gallery | collection of hundreds of charts made with Python |
| R Graph Gallery | collection of hundreds of charts made with the R programming language |
| RNA-seq Analysis | RNAseq analysis notes from Ming Tang |
| Workflowhub | A registry of scientific computational workflows |