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Delta-variant-outbreak-in-GZ
Delta-variant-outbreak-in-GZ PublicThe pipeline for calling variants and generated consensus sequences from NGS data generated in this study
R 4
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sewage-norovirus-surveillance
sewage-norovirus-surveillance PublicThis pipeline and R scrips are used to analyze the norovirus genotypes distribution in sewage through amplicon NGS
R 1
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variant_pipeline
variant_pipeline PublicForked from lauringlab/variant_pipeline
Work on the variant_pipeline and initial r analysis used in calling variants from NGS data
Python
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ncov
ncov Public templateForked from nextstrain/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
Python 1
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betabinomial_bottleneck
betabinomial_bottleneck PublicForked from koellelab/betabinomial_bottleneck
Code for estimating transmission bottleneck sizes using the betabinomial approach
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